Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C01
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical...    30   1.7  
Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z54235-5|CAA90976.2|  202|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical pr...    27   8.9  
X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin pr...    27   8.9  
U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory ...    27   8.9  

>AC084197-27|AAG23467.2|  314|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.21 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 267 PYNGQVCKSYSTGYVWYNHTGGLDNEKITSGLW--KEMISNLQEPCRTQAERLLCAYAFP 440
           P N  +C      Y        L++E ++  +   K+  S L+  C    +R LC+   P
Sbjct: 41  PSNLSICNGIE--YTQMRLPNILEHETVSEAIHASKDWESLLRLNCHPDTQRFLCSLFAP 98

Query: 441 KCINKDGVGYFALPLCYEDCMAVKMQFCYN 530
            C+ +  +    LP C   CMAVK Q C N
Sbjct: 99  VCLMQ--MDRLILP-CKSLCMAVK-QGCEN 124


>Z93377-3|CAB07580.1|  358|Caenorhabditis elegans Hypothetical
           protein F13A7.7 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 197 DYC*MVLDFSVTSYSDLNHNIVKRQKLYNGGQCIKLCLYRIDF 69
           D+  +VL+ S  ++       + R K Y+G QC+KL +  + +
Sbjct: 207 DFLKLVLNTSKPTWEMFEQAKLGRHKSYSGSQCVKLYIPNLSY 249


>Z77131-2|CAB00853.4|  444|Caenorhabditis elegans Hypothetical
           protein C54C6.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNH 141
           +D +  YD C   L  S  +Y DLNH
Sbjct: 202 IDNEALYDICFRTLKLSNPTYGDLNH 227


>Z54235-5|CAA90976.2|  202|Caenorhabditis elegans Hypothetical
           protein C09G9.7 protein.
          Length = 202

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = -1

Query: 435 MRKHKAIFQLG---SCMVLEDLRSFLSKGHLLSSRCRVRQCGCTIRSR*NNFYILAHCMD 265
           M+K     QLG   SC V + LR +   G +++  CR   C C   +  ++     H  D
Sbjct: 108 MKKIHIAKQLGITHSC-VSKVLRRYAETGEIVAKACRTASCSCPGSAEEHDARYCKHLQD 166

Query: 264 HNI 256
           + I
Sbjct: 167 NTI 169


>Z46240-1|CAA86310.1|  444|Caenorhabditis elegans Hypothetical
           protein B0272.1 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNH 141
           +D +  YD C   L  +  +Y DLNH
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNH 227


>X15242-1|CAA33320.1|  441|Caenorhabditis elegans beta-tubulin
           protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNH 141
           +D +  YD C   L  +  +Y DLNH
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNH 227


>U70844-1|AAB09092.1|  441|Caenorhabditis elegans Mechanosensory
           abnormality protein7 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 218 LDEQVHYDYC*MVLDFSVTSYSDLNH 141
           +D +  YD C   L  +  +Y DLNH
Sbjct: 202 IDNEALYDICFRTLKLTTPTYGDLNH 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,974
Number of Sequences: 27780
Number of extensions: 317321
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)