Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_C01
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                26   0.28 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   4.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 483 LCYEDCMAVKMQFCYNDWIVIEDQKERGVFFESXGHFRLPE 605
           +C    +   +QFC+N  IV  D K + +     G  +L +
Sbjct: 158 ICILKSITCALQFCHNAGIVHADVKPKNILMSKNGQPKLTD 198


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 GYIVVHTMGKYVKVILPATY 312
           G +   T GKY + I+PA Y
Sbjct: 186 GKLDTKTSGKYKEYIIPANY 205


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 253 GYIVVHTMGKYVKVILPATY 312
           G +   T GKY + I+PA Y
Sbjct: 186 GKLDTKTSGKYKEYIIPANY 205


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 486 CYEDCMAVKMQFCYNDWIVIEDQ-KERGVFFES 581
           CY DCM  K+ F   D    E++ +ER    +S
Sbjct: 61  CYVDCMLKKVGFVNADTTFNEEKFRERTTKLDS 93


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 379 QIFKNHAGPKLKDCFV 426
           ++  +  GPK+KDC +
Sbjct: 416 ELASSFVGPKVKDCLI 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,392
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)