Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit L28... 27 1.8
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 27 3.1
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 4.1
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 25 7.2
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 7.2
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 7.2
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.5
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 9.5
>SPAC4F8.05c |mrpl28||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 447 QHKRRDDLPQKKPSYLNLACSVNGYTNLTTYDSKLRQDINK 569
Q K+R++L + + S + +AC +T+ T Y + + IN+
Sbjct: 60 QEKQRENLLKNQFSAMKIACEELKHTSETLYKAAMSDSINR 100
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 284 AGRLESTTKLLDPNPGGHPNQDPRGDHTDS*EI*APPETTPKSSRRLVKSSIPWTTQTSR 463
A RL + + + P P QD + D + PKS + L KSS+ + Q+S+
Sbjct: 137 ARRLRTQFERVYPVPEWAKKQDVT-EEEDEFNALSEKSVIPKSLKSLFKSSVSYINQSSK 195
Query: 464 RSAP 475
AP
Sbjct: 196 LLAP 199
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 561 INKSREASPIRPITYTYQYRSENNSLL 641
IN +R ASP RP + + Q S SLL
Sbjct: 477 INSNRAASPFRPTSVSPQPSSPTKSLL 503
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 528 LTTYDSKLRQDINKSREASPIRPIT 602
L + KL +D+N + SPI P+T
Sbjct: 170 LNFFLDKLHEDLNSNASRSPIAPLT 194
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 467 SAPKETKLLEPSLFRKWLYQLNDLRLETKARHKQEPGSV 583
S + T L L K +Y NDL L T RH + SV
Sbjct: 209 SKAEPTSLFRNVLHGKRIYFSNDLNLPTNFRHSLQKFSV 247
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 304 CRFEPARSCMRDVKSLTRLVVDDGVRRFRLPDV 206
C FE +S RD+KSL +++D+ +R+ D+
Sbjct: 102 CGFEKIQSKQRDLKSLRVIILDN----YRIEDI 130
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 447 QHKRRDDLPQKKPSYLNLACSVNGYTNLTTYDSKLRQDINKSREASPIRPITYTYQYRSE 626
+++ R D PQ++PS L+ S++ Y + Y + ++I E P + T +R++
Sbjct: 11 RNQYRVDQPQRQPSRLSTVASISEYQ--SDYSKTVFEEI--ELEVIPNKQNISTRSFRND 66
Query: 627 NN 632
N
Sbjct: 67 GN 68
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 531 LSWYSHLRNRLGSSSLVSFGADRLDVCVVHG-IDDL 427
LS SH+ ++ L+S DVCV++ +DDL
Sbjct: 1009 LSPTSHVYSKFDYQKLISLTLKDSDVCVIYNFVDDL 1044
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 301 RFEPARSCMRDVKSLTRLVVDDGVRRFRLPDV 206
RF A MR++ LT+L+VD V ++RL ++
Sbjct: 562 RFGNAFHLMREILRLTKLIVDSHV-QYRLGNI 592
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 428 KSSIPWTTQTSRRSAPKETKLLEPSLFRKWLYQLNDLRLETKARHKQEPGSVTNQTDN 601
+ ++ T +T++++ ET S FRK+ LNDLR +R+++ + T + N
Sbjct: 597 QENVSSTVETAKQA---ETTASSDS-FRKYANTLNDLRHLKSSRNRKATSNETQSSSN 650
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 567 KSREASPIRPITYTYQYRSENNSLLV 644
+SR A P+T TY Y S LLV
Sbjct: 37 QSRYADRYDPVTDTYSYSSARQGLLV 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,177
Number of Sequences: 5004
Number of extensions: 51221
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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