Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B23
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 31 1.1
11_06_0610 - 25449085-25453284 29 2.4
09_01_0013 - 355103-355435 29 3.2
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 29 3.2
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 28 5.6
11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711 28 5.6
06_03_0046 - 15852653-15854560 28 5.6
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 5.6
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 28 5.6
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991... 28 5.6
12_02_0047 - 12836779-12837189 27 9.9
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 27 9.9
04_03_0070 + 10677677-10679989 27 9.9
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 271 PAYKSGPARIYNKTT*PQPRWSPQSGPQRRPHRL 372
P S PA++ + T PQP PQ G +RR RL
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQPGDRRRRPRL 82
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 386 APPETTPKSSRRLVKSSIPWTTQTSRRSAPKETKLLEPS 502
+PP TP+SS K S P T T + S P + + PS
Sbjct: 897 SPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPS 935
>09_01_0013 - 355103-355435
Length = 110
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 322 QPRWSPQSGPQRRPHRLLG 378
+PRW PQ P+ RP R LG
Sbjct: 40 RPRWRPQRRPRWRPQRRLG 58
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +3
Query: 435 RSRGQHKRRDDLPQKKPSYLNLACSVNGYTNLTTYDSKLRQDINKSREASPIRPITYTYQ 614
RS+G+ + + KK Y LA ++ + + +L+Q +N+ ASP+ P T Q
Sbjct: 376 RSKGECEETNVAQLKKEIYDELAAKID-----SEVEERLQQALNQRSVASPVEPSPNTIQ 430
Query: 615 YRSENNSLLVPVP 653
+S++ PVP
Sbjct: 431 -----DSVVSPVP 438
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 317 DPNPGGHPNQDPRGDHTDS*EI*APP---ETTPKSSRRLVKSSIP 442
DP P P + +GD + + PP ET P+ S+R K +P
Sbjct: 52 DPCPSPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKRQPKKKVP 96
>11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711
Length = 425
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 260 RLHIPHTRAG-RLESTTKLLDPNPGGH 337
RLH+P RAG RLE+TT++ P H
Sbjct: 348 RLHVPSGRAGRRLEATTEIAIPGRTYH 374
>06_03_0046 - 15852653-15854560
Length = 635
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 280 KSGPAR---IYNKTT*PQPRWSPQSGPQRRPHRLLGNLSTS*NHPQKFTSTRQVIDPVDN 450
KS PA+ +Y + PR + QS PQ P + NL+ +PQ+F QV+ N
Sbjct: 289 KSSPAKKMAVYPRIP-SSPRNTVQSNPQNFPSLAMANLNP---NPQRFLRQGQVVHQGGN 344
Query: 451 TNVETI 468
V +
Sbjct: 345 LRVPRV 350
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 248 KSSERLHIPHTRAGRLESTTKLLDPNPGGHPNQD-PRGDHTDS*EI*APPETTPKSS 415
+ RL GR LDP+PGG P+++ RG++ D + P T+P SS
Sbjct: 4 RKERRLAAKAAAGGRRVKLDLFLDPSPGGTPSKEGERGENHDQ-QTGVP--TSPSSS 57
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 346 GPQRRPHRLLGNLSTS*NHPQKFTSTRQVIDPVDNTN 456
GP+ RP RL G+LST +H + R++ +D N
Sbjct: 50 GPRPRPRRLWGSLSTL-DHLHPYAKPRKIYPALDYHN 85
>02_03_0365 -
18198669-18198809,18198887-18198979,18199078-18199138,
18199291-18199336,18199417-18199682,18199766-18200744,
18201012-18201564,18201661-18201909,18201995-18202234
Length = 875
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 317 DPNPGGHPNQDPRGDHTDS*EI*APP---ETTPKSSRRLVKSSIP 442
DP P P + +GD + + PP ET P+ S+R K +P
Sbjct: 52 DPCPSPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKRQPKKKVP 96
>12_02_0047 - 12836779-12837189
Length = 136
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 401 TPKSSRRLVKSSIP---WTTQTSRRSAPKETKLLEPSLFRKWLYQLNDLRLETKA 556
T +++++ ++P + +R+SAP L +P F W+ L ++R K+
Sbjct: 4 TKQTAKKSTAGNVPRKLLVMKVARKSAPMMAGLKKPHRFNPWIVALREIRTYQKS 58
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 237 MELGDSDYPMLYQTSVGFSP 178
MEL DS YP+L + S+G P
Sbjct: 124 MELEDSLYPLLREVSIGIDP 143
>04_03_0070 + 10677677-10679989
Length = 770
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 465 DLPQKKPSYLNLACSVNGYTNL 530
DL K P LNLAC V+G + L
Sbjct: 379 DLEHKHPWMLNLACQVHGLSRL 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,240
Number of Sequences: 37544
Number of extensions: 347414
Number of successful extensions: 1000
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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