Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B21
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 159 4e-40
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 103 2e-23
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 73 5e-14
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 36 0.005
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 30 0.25
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 29 0.44
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 29 0.59
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 0.77
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.77
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 1.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 1.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.4
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 2.4
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.4
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 27 3.1
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 3.1
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 27 3.1
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 26 4.1
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.5
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 7.2
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 7.2
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 25 7.2
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 7.2
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 9.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 9.5
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 9.5
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 25 9.5
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 159 bits (385), Expect = 4e-40
Identities = 71/133 (53%), Positives = 97/133 (72%), Gaps = 1/133 (0%)
Frame = +1
Query: 250 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 429
++ A + G A SGKST+C ++ + R +VNLDPAAE+F++EP VDIR+LI +D
Sbjct: 2 VKVAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISID 61
Query: 430 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 609
D ME EL +GPNGGL++C E L+EN DWL E++GD D+DY++FD PGQIELYTH+P++
Sbjct: 62 DVME--ELDYGPNGGLIYCFEFLMENLDWLNEEIGDYDEDYLIFDMPGQIELYTHVPILP 119
Query: 610 RLVDLLQ-NWNFR 645
L+ LQ NFR
Sbjct: 120 ALIRHLQVTLNFR 132
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 103 bits (248), Expect = 2e-23
Identities = 47/127 (37%), Positives = 81/127 (63%)
Frame = +1
Query: 250 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 429
M + Q++VGP GSGKSTYC + + R +VNLDPA + Y +DIR+++ ++
Sbjct: 1 MPFCQVVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDPANDFIKYPCAIDIRKVLDVE 60
Query: 430 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 609
+D +L GPNG L++ +E + + +WL ++L D Y++FDCPGQ+EL+T+ ++
Sbjct: 61 MIQKDYDL--GPNGALIYAMEAIEYHVEWLLKELKKHRDSYVIFDCPGQVELFTNHNSLQ 118
Query: 610 RLVDLLQ 630
+++ L+
Sbjct: 119 KIIKTLE 125
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 72.5 bits (170), Expect = 5e-14
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Frame = +1
Query: 238 NKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIREL 417
+K+ A ++VG AGSGK+T+ + H + ++NLDPA + YE +DIR+
Sbjct: 3 DKEKKPCAIIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIRDT 62
Query: 418 IHLDDAMEDEELKFGPNGGLVFCIETLLENSDW----LEEQLGDVDDDYILFDCPGQIEL 585
I+ + M+ L GPNGG++ + + D LE++ V D+IL D PGQIE+
Sbjct: 63 INYKEVMKQYNL--GPNGGIMTSLNLFVTKFDQVLKILEKRAPTV--DHILIDTPGQIEI 118
Query: 586 Y 588
+
Sbjct: 119 F 119
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 235 LNKKTMRYAQLIVGPAGSGKSTYCSTIVK-HAMDSKRIVD 351
L ++ ++ ++VGP+GSGKST +T+ H MDSK +D
Sbjct: 26 LIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLD 65
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 369
++ GP GSGKS++ I + R + ++LDP
Sbjct: 335 MVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDP 369
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVKH 324
I+GP+GSGKST+ S ++++
Sbjct: 467 IIGPSGSGKSTFISLLLRY 485
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.59
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIV-KHAMDSKRIVDVVNLDPAAEHFDYEPLVDI-REL-IHLDDA 435
+IVGP GSGKS I+ + A + VV L+ + D L +I R+L I L+
Sbjct: 579 IIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIELESI 638
Query: 436 MEDEELK 456
DE LK
Sbjct: 639 ESDEALK 645
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 256 YAQLIVGPAGSGKSTYCSTI 315
Y LI+GP G+GKST S I
Sbjct: 34 YLNLIIGPNGTGKSTIVSAI 53
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 214 LTTHVLDLNKKTMRYAQLIVGPAGSGKSTYCSTI 315
+T ++ + +Y +++GPAGSGK+T +
Sbjct: 1 MTVTPINPTNQPYKYVFVVIGPAGSGKTTMAKAV 34
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 214 LTTHVLDLNKKTMRYAQLIVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLDPAAEHFD 387
L ++L K R + G GSGKST C+ + K + IV ++ +D H+
Sbjct: 16 LYNRAVELLKHQQRVLIGLAGGPGSGKSTLCAILAKAWNERFGSEIVKIIPMD--GFHYS 73
Query: 388 YEPL 399
E L
Sbjct: 74 LEEL 77
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 232 DLNKKTMRYAQL-IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 366
D+N + + ++ IVG GSGKST T+++ M V+V +D
Sbjct: 1199 DINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGID 1244
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQPQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQLQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQLQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 349 LQCVWNPLHVSLL*SSMLTFHFRLVPLLTERNALFFCLDLKHELLTRFIFF 197
+Q +++P +L+ SS++ F R+V + ++F DLK + FIF+
Sbjct: 497 VQSLYHP-SAALMGSSLVEFPMRIVVVTMYDIIVYFLSDLKRNARSFFIFY 546
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 496 LLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPV 603
L++N D + G+++DD I+F P ++ Y H+ V
Sbjct: 380 LVQNKDMEVDDGGEIEDDAIVFSVPPTLQEY-HVSV 414
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQLQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.4
Identities = 24/67 (35%), Positives = 31/67 (46%)
Frame = +3
Query: 150 DKKTGSYAKITYSF*QKNINRVNNSCFRSKQKNNALRSVNSGTSRKWKVNILLYNSETCN 329
DK+T SY K F +N N S +KNN + NS RK V+ + Y+S N
Sbjct: 191 DKRTASYGKTHKRFQLQNKNLGKESL---SKKNN---TTNSRNLRKTNVSRIEYSS---N 241
Query: 330 GFQTHCR 350
F H R
Sbjct: 242 KFLNHTR 248
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD 366
I GP+GSGK++ IVK A++ +V +++LD
Sbjct: 26 IAGPSGSGKTSVAQLIVK-ALNLPHVV-ILSLD 56
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 529 VAPLTSQNSLRGSQYKTLDHHLVQISIPHLP*HHQG 422
+ P +NSL S ++ HH PHLP +HQG
Sbjct: 146 IDPFEVKNSLHDSTDLSITHH------PHLPINHQG 175
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDP 369
++GP GK++ + +A+ R VNLDP
Sbjct: 111 LIGPRSCGKTSVLKILESYALKQSRHPICVNLDP 144
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 586 YTHLPVMRRLVDLLQNW 636
Y HL V +R+ D+LQ W
Sbjct: 187 YAHLTVSKRMKDVLQTW 203
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 235 LNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDS 336
+++ + + ++ G +G GK+T+C+T+ + S
Sbjct: 22 VSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKS 55
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIVKH 324
++VG GSGK+T CS + H
Sbjct: 105 MMVGLQGSGKTTTCSKLALH 124
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFD 387
++G GSGKST+ ++ ++ +D L+ AE D
Sbjct: 106 LLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSD 145
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 235 LNKKTMRYAQLIV--GPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 375
++K++ Y IV GP+G+GKS VK+ D ++ V +D A+
Sbjct: 1 MDKESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDD-QVSHTVGIDFAS 48
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 289 GKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIR 411
G +C + +SK ++ + NL A DY PL DIR
Sbjct: 359 GTLPFCRRYLDRIGESKYLLALNNLVSAGIVQDYPPLCDIR 399
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 508 SDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 609
S W +L + Y+ FDC + Y+ + V R
Sbjct: 63 SSWFNSKLSKLSAGYLQFDCQNDGKCYSVIAVHR 96
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 283 GSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAM-EDEELKF 459
G+ KS + I+ A K + L F VD++EL ++ ED++LKF
Sbjct: 99 GNAKSLVANYIITGAWSKKAYAEAERLG-----FPCHVAVDMKELAGKYGSLPEDKDLKF 153
Query: 460 GPNG 471
P+G
Sbjct: 154 TPDG 157
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 STIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELI-HLDDA 435
S I+KHA+ IV V N+D A F++ L L+ HL +A
Sbjct: 304 SYIIKHAIKKSVIVQVDNVDQA---FEWSNLYGPEHLVLHLKNA 344
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIV 318
+++GP GSGKS+ S ++
Sbjct: 645 IVIGPTGSGKSSLISALL 662
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 203 IFLLERIGYFCIAACFLIA 147
+FLLE I CIA FLIA
Sbjct: 437 VFLLEEIVELCIAEGFLIA 455
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 349 LQCVWNPLHVSLL*SSMLTF-HFRLVPLLTERNALFFC 239
LQ W PLH+ LL ++ F H++ V + + C
Sbjct: 82 LQLRWRPLHIELLLGNIKDFTHYKHVDAVVASEFIEHC 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,805
Number of Sequences: 5004
Number of extensions: 54024
Number of successful extensions: 214
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -