Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B21
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 183 1e-46
U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical pr... 100 1e-21
U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon g... 68 7e-12
AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein. 68 7e-12
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 29 3.8
Z81064-3|CAB02961.2| 268|Caenorhabditis elegans Hypothetical pr... 29 3.8
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 29 3.8
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 29 3.8
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 28 6.7
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 183 bits (445), Expect = 1e-46
Identities = 76/131 (58%), Positives = 105/131 (80%)
Frame = +1
Query: 250 MRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLD 429
M+YAQL++GPAGSGKSTYCS + H + + R + +VNLDPA E F+Y +VD+R+LI ++
Sbjct: 1 MKYAQLVMGPAGSGKSTYCSVMYNHCLSTGRTLRMVNLDPACEVFNYPAVVDVRDLISVN 60
Query: 430 DAMEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMR 609
D EDEEL GPNG LVFC+E L++N +WL ++L + +DDY + DCPGQIELY+HLPVMR
Sbjct: 61 DVQEDEELILGPNGALVFCMEYLVQNLEWLHDELDEGEDDYFVIDCPGQIELYSHLPVMR 120
Query: 610 RLVDLLQNWNF 642
++VD L++W+F
Sbjct: 121 QIVDALKSWDF 131
>U97196-2|AAB52461.2| 268|Caenorhabditis elegans Hypothetical
protein B0207.6 protein.
Length = 268
Score = 100 bits (239), Expect = 1e-21
Identities = 49/130 (37%), Positives = 76/130 (58%)
Frame = +1
Query: 256 YAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDA 435
Y L++G G+GKST+C+ + +KR +NLDPA + Y P V+I E+I ++D
Sbjct: 2 YGVLVIGAPGAGKSTFCAGLTDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVNDV 61
Query: 436 MEDEELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRL 615
M+ L GPNG L +CIETL N +WL +++ Y++ DCPGQ+ELY + ++
Sbjct: 62 MD--RLGLGPNGALKYCIETLGANCNWLLQKIEANHKKYLIIDCPGQLELYKSEGELWKV 119
Query: 616 VDLLQNWNFR 645
+ L+ R
Sbjct: 120 IRFLEKSGVR 129
>U10402-10|AAA19064.1| 355|Caenorhabditis elegans Gro-1 operon gene
protein 2 protein.
Length = 355
Score = 67.7 bits (158), Expect = 7e-12
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 444
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 445 EELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDY--ILFDCPGQIELYT 591
+E GPNG ++ C+ + D + E + D+ L D PGQIE +T
Sbjct: 92 KEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFT 142
>AY052770-1|AAL14109.1| 355|Caenorhabditis elegans GOP-2 protein.
Length = 355
Score = 67.7 bits (158), Expect = 7e-12
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = +1
Query: 265 LIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAAEHFDYEPLVDIRELIHLDDAMED 444
L++G AGSGK+T+ + K V+NLDPA Y VDIR+ + + M
Sbjct: 34 LVLGMAGSGKTTFVQRLTAFLHARKTPPYVINLDPAVSKVPYPVNVDIRDTVKYKEVM-- 91
Query: 445 EELKFGPNGGLVFCIETLLENSDWLEEQLGDVDDDY--ILFDCPGQIELYT 591
+E GPNG ++ C+ + D + E + D+ L D PGQIE +T
Sbjct: 92 KEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFT 142
>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical protein
C05A9.1 protein.
Length = 1283
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNL 363
+VGP+GSGKST S + + HA+D + +D N+
Sbjct: 1069 LVGPSGSGKSTIISLLERFYHAVDGEVKIDEENV 1102
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 69 PSACTAFIFQLITFQIVFYNK 7
PS + FIF++ F+++FY+K
Sbjct: 268 PSVLSVFIFEIFIFEVIFYSK 288
>Z70268-5|CAJ85767.2| 1204|Caenorhabditis elegans Hypothetical protein
T21E8.1b protein.
Length = 1204
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 366
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 990 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1024
>Z70268-4|CAA94220.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.1a protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 366
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>Z70268-3|CAA94219.3| 1263|Caenorhabditis elegans Hypothetical protein
T21E8.2 protein.
Length = 1263
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 268 IVGPAGSGKSTYCSTIVK--HAMDSKRIVDVVNLD 366
+VGP+G GKST S + + HA+D + +D N++
Sbjct: 1049 LVGPSGCGKSTIISLLERFYHAVDGEVKIDSENVE 1083
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 253 RYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLDPAA 375
R ++VG AGSGKST + + + +K+ + V +P A
Sbjct: 1914 RIGVVVVGAAGSGKSTIWKILQRSLILTKKPLKVTQFNPKA 1954
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 229 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 399
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 102 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 158
Query: 400 VDI----RELIHLDDAMEDE 447
VD+ +EL HL + + +
Sbjct: 159 VDVDSVRKELEHLAEQLASQ 178
>Z81064-3|CAB02961.2| 268|Caenorhabditis elegans Hypothetical
protein F16B12.4 protein.
Length = 268
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 490 ETLLENSDWLEEQLGDVDDDYILFDCPGQIELYTHLPVMRRL 615
E L E D++EE+ + DDD + G+ +TH + R L
Sbjct: 59 ENLAEIPDFIEEKCDEFDDDEYILQPTGEDSKFTHNDMNRVL 100
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 229 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 399
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 101 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 157
Query: 400 VDI----RELIHLDDAMEDE 447
VD+ +EL HL + + +
Sbjct: 158 VDVDSVRKELEHLAEQLASQ 177
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Frame = +1
Query: 229 LDLNKKTMRYAQLIVGPAGSGKSTYCSTIVKHAMDSKRIVDVVNLD---PAAEHFDYEPL 399
L+LN+ RY ++G GSGKST I M VD+ + PA+E + +
Sbjct: 102 LELNRGR-RYG--LIGLNGSGKSTIIQAIYNKEMPIPESVDMYLVSREMPASEKTALQAV 158
Query: 400 VDI----RELIHLDDAMEDE 447
VD+ +EL HL + + +
Sbjct: 159 VDVDSVRKELEHLAEQLASQ 178
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 241 KKTMRYAQL--IVGPAGSGKSTYCSTIVKHAMDSKRIV 348
K T Y L I G G +S YC+ I++H + +K ++
Sbjct: 117 KFTAEYRDLLAITGDQGGYRSIYCAHIIQHLIRNKNLI 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,853
Number of Sequences: 27780
Number of extensions: 303246
Number of successful extensions: 994
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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