Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B17
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    30   0.25 
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.3  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   1.3  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   1.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   1.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   4.1  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   9.5  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   9.5  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   9.5  

>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +2

Query: 392 VSCWGNYA---WDVNVRFRFENHFIVANAVYRGRPVTESNIQEYISDIVSKYFSPDQPPW 562
           V+ WG +    W V    +  NH+   N     + +TE   Q Y  D +     P  P W
Sbjct: 217 VALWGAFFIQFWRVQ-EHKLTNHWSTVNCQSLAKSMTEFKPQSYRVDSLLGTARPYYPQW 275

Query: 563 QYIIIPCAATEPKYYI 610
           + I+    A  P + I
Sbjct: 276 EIIVRSTIANVPLFLI 291


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = +2

Query: 275 LAVKGNPNVDEI------KEKLIEHVIDKRDRNGQFMFPRLRHLLVS 397
           L V+ N NVDEI      ++ +++ + D RDR  +   PR+ HL V+
Sbjct: 582 LTVENNVNVDEIENYEEVRDSILKKLSDLRDRPKRSEKPRIYHLDVA 628


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 366 MNCPFLSRLSITCSMSFSLISSTFGLPFTASSTLMIP 256
           +N PF  +L ITC  S+  + STF     ASS   +P
Sbjct: 126 VNWPFRKKLKITCVYSYVALCSTF-----ASSVFSVP 157


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -2

Query: 97  LAEVNKLLNVTVQFLFISLNECSSIVSSWSI 5
           +++  +L  V++Q L   LNE S+IVS W+I
Sbjct: 320 VSDQKELERVSLQTLHPILNEMSAIVSKWNI 350


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 240 SSNVLTVSVLMNSKSGYLLDSS---LSHKCLLTRTTVNKEEHVLVYIK*TN*LK*TN 79
           SS V T+S L   K  YL+ S    +  K + + TT+ K      YI  TN +  TN
Sbjct: 519 SSTVDTISKLNTDKDNYLIKSKKEPIQQKSVSSETTLVKPSSTSSYIDTTNNVLKTN 575


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 512 YISDIVSKYFSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 643
           Y   I +  F  + PP  +I+I  +++    Y L  ++H+ +SG
Sbjct: 535 YNKMIRAPLFKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSG 578


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 65  CYIQ*FVYFS*FVYLIYTRT 124
           C++Q F YF  F +L Y  T
Sbjct: 277 CFVQFFAYFGWFPFLFYITT 296


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 LDTHRNQGIINVLLAVKGNPNVDEIKEKLIEH 331
           + TH      N+L+ + G P  D +KE+L  H
Sbjct: 230 MPTHPESVPFNLLVPIPGTPVGDAVKERLPIH 261


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 387 YSSHAGATTLGMSTCVFGLKTTSS*LMLFTEVDRL---QRVIYRNTSV 521
           Y  H     +GM  C  G +  +S  + FT +D+L   +RVI   T +
Sbjct: 395 YVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPI 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,781
Number of Sequences: 5004
Number of extensions: 55579
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)