Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B17
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    34   0.085
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    34   0.085
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    29   2.4  
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431...    29   2.4  
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    29   3.2  
11_06_0588 + 25272067-25274850                                         28   5.6  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   9.8  

>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +2

Query: 368 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 538
           +PR R + V+    GN  W V      ++H I             +  +++Y++ + +K 
Sbjct: 85  YPRFRSIQVTDEDGGNPRW-VRTTLNVDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 143

Query: 539 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 643
               +P W++ ++    +E      +RVHH L  G
Sbjct: 144 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 178


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +2

Query: 368 FPRLRHLLVSC--WGNYAWDVNVRFRFENHFIVANAVYRGRPVT-ESNIQEYISDIVSKY 538
           +PR R + V+    GN  W V      ++H I             +  +++Y++ + +K 
Sbjct: 89  YPRFRSIQVTDEDGGNPRW-VRTTVNLDDHIIYPELDMDAVAADPDKAVEDYVASLSTKP 147

Query: 539 FSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 643
               +P W++ ++    +E      +RVHH L  G
Sbjct: 148 MDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 182


>09_04_0609 -
           18929600-18929646,18929753-18929924,18930304-18930498,
           18930691-18930801,18930885-18931097,18931643-18931720,
           18931894-18932001,18932175-18932316,18932413-18933761,
           18934492-18935121
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 241 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 137
           +Q+C +C+  +     +S+ Q     +S HTY C+
Sbjct: 803 IQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCR 837


>05_07_0064 +
           27440520-27440942,27442387-27442998,27443109-27443175,
           27443271-27443362,27443493-27443708,27443869-27444006,
           27444325-27444474
          Length = 565

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 503 IQEYISDIVSKYFSPDQPPWQYIIIPCAATEPKYYILVRVHHLLLSG 643
           I++Y+S + ++     +P W+  ++    +E    + VR+HH L  G
Sbjct: 183 IEDYMSTLSTQPMDHSRPLWELHVLDFPTSEAAATVAVRMHHSLGDG 229


>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 241 VQQCSDCVSFDEFEIWISTGQQSKP*MSAHTYNCK 137
           +Q+C +CV  D  +  IST       +S H Y C+
Sbjct: 839 IQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCR 873


>11_06_0588 + 25272067-25274850
          Length = 927

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 117 LEHVLPYLQLYV*ADIYGLDCCPVDIQISNSSKLTQSEHCWTRIGIRGSLTYYWP*KVI 293
           L  +LP + +Y+   IY +      +  + S   +Q    +  +G RGSL  YWP K++
Sbjct: 373 LRKILPCMLIYLEPQIYFMKMLLRFLYYNESGSSSQ---VYDALGNRGSLHDYWPKKMV 428


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 563  QYIIIPCAATEPKYYILVRVHH 628
            +Y++I C +T+PKY     +HH
Sbjct: 5111 KYLLILCYSTKPKYQPKASIHH 5132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,842
Number of Sequences: 37544
Number of extensions: 317785
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)