Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B17
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    27   8.7  
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.       27   8.7  
AF003135-5|AAK18990.1|  678|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z68009-3|CAA92005.1|  817|Caenorhabditis elegans Hypothetical
           protein R09A8.3 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 594 SVAAHGIIMYCQGGWSGEKYFDTMSLM 514
           +V   G +++C GG++G K+ DT+ L+
Sbjct: 750 AVVTAGNVIFCIGGFNGVKFLDTIELL 776


>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 545 PDQPPWQYIIIPCAATEPKYYIL 613
           P Q PW  II+PCA  +  + I+
Sbjct: 263 PSQLPWNMIILPCAKPDLCFIII 285


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 545 PDQPPWQYIIIPCAATEPKYYIL 613
           P Q PW  II+PCA  +  + I+
Sbjct: 263 PSQLPWNMIILPCAKPDLCFIII 285


>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
          Length = 1666

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 306  SSTFGLPFTASSTLMIP*FRCVSSNVLTVSVLMNSKSGYLLDSSLSHKCL 157
            +S +G    +SST +IP  + V+S+    S  +N   G  L SS SH  L
Sbjct: 1325 ASMYGYQSPSSSTTVIPAPKGVASSSNNTSPRVNVTLGGALSSSRSHNSL 1374


>AF003135-5|AAK18990.1|  678|Caenorhabditis elegans Hypothetical
           protein W03F11.6b protein.
          Length = 678

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 306 SSTFGLPFTASSTLMIP*FRCVSSNVLTVSVLMNSKSGYLLDSSLSHKCL 157
           +S +G    +SST +IP  + V+S+    S  +N   G  L SS SH  L
Sbjct: 343 ASMYGYQSPSSSTTVIPAPKGVASSSNNTSPRVNVTLGGALSSSRSHNSL 392


>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
            protein W03F11.6c protein.
          Length = 1419

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 306  SSTFGLPFTASSTLMIP*FRCVSSNVLTVSVLMNSKSGYLLDSSLSHKCL 157
            +S +G    +SST +IP  + V+S+    S  +N   G  L SS SH  L
Sbjct: 1323 ASMYGYQSPSSSTTVIPAPKGVASSSNNTSPRVNVTLGGALSSSRSHNSL 1372


>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
            protein W03F11.6a protein.
          Length = 1658

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 306  SSTFGLPFTASSTLMIP*FRCVSSNVLTVSVLMNSKSGYLLDSSLSHKCL 157
            +S +G    +SST +IP  + V+S+    S  +N   G  L SS SH  L
Sbjct: 1323 ASMYGYQSPSSSTTVIPAPKGVASSSNNTSPRVNVTLGGALSSSRSHNSL 1372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,182
Number of Sequences: 27780
Number of extensions: 308498
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)