Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B16
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   123   1e-30
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   123   1e-30
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 1e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 138 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 317
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 318 VRIPKEQGSPFILAW 362
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  116 bits (278), Expect = 2e-28
 Identities = 53/70 (75%), Positives = 54/70 (77%)
 Frame = +1

Query: 340 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 519
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 520 TSLCFVYPLD 549
           TSLCFVYPLD
Sbjct: 128 TSLCFVYPLD 137


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  123 bits (296), Expect = 1e-30
 Identities = 58/75 (77%), Positives = 67/75 (89%)
 Frame = +3

Query: 138 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 317
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 318 VRIPKEQGSPFILAW 362
           VRIPKEQG  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  116 bits (278), Expect = 2e-28
 Identities = 53/70 (75%), Positives = 54/70 (77%)
 Frame = +1

Query: 340 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXX 519
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF            
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGA 127

Query: 520 TSLCFVYPLD 549
           TSLCFVYPLD
Sbjct: 128 TSLCFVYPLD 137


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 63  VIPHPRVPQLPPRHIHLVKIT 125
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,960
Number of Sequences: 438
Number of extensions: 2629
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)