Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B10
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    34   0.014
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    27   2.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.9  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   6.7  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.8  

>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +2

Query: 242 ASHAEACTGRMRAWRIHAYG-PTTELRLEEARVPPLRA---PDEILVRVHASSVNPIDVA 409
           +S  ++  G   AW  +  G P   L LE+    P  A   P ++LV V A+S+NP+D  
Sbjct: 2   SSETKSEFGTKSAWLYNRTGKPKDVLYLEKGLHIPNPAELGPYDVLVEVVATSINPLDY- 60

Query: 410 MIGGYGSKILNTLRTIESGEGIEFPLIAGRDFCGR 514
                  K++NT + I      + P I G DF GR
Sbjct: 61  -------KLMNTYQMIAKAL-FKLPNIPGYDFAGR 87


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 266 GRMRAWRIHAYG-PTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMIGG-YGSK 433
           G  +A     YG P   LR     VP   + +++ VR  AS +NP D+  I G Y SK
Sbjct: 19  GMAKAIAYSEYGNPKEVLRAVSYNVPKC-SKNQVNVRFLASPINPSDINQIQGVYPSK 75


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 153 CIFLIFYFNLFKIK 112
           CIFL FYF  FKI+
Sbjct: 310 CIFLYFYFRRFKIR 323


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 341 PLRAPDEILVRVHASSVNPIDVAMIGGYGSKILNTLRTIESGEGIEFPLIAGRDFCG 511
           P+  P++ LV  +   VNP +    GG   K+L      E    I++ ++ G D CG
Sbjct: 110 PINEPEKDLVVQY--EVNPEEGLNCGGAYLKLLAEPTHGEMSNSIDYRIMFGPDKCG 164


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 488 SKGILSL-HHFLWFAVCLIF*NH 423
           +K IL + HH +WF  C+ F NH
Sbjct: 117 NKCILRMDHHCMWFKNCVGFRNH 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,871
Number of Sequences: 5004
Number of extensions: 41378
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)