Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B10
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 48 6e-06
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 46 3e-05
09_04_0643 + 19176561-19176644,19176761-19176902,19178084-191781... 35 0.060
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730... 32 0.42
11_03_0153 + 10834388-10834813,10835731-10836012,10836153-108363... 31 0.56
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115... 31 0.97
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 31 0.97
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514... 29 3.0
04_01_0208 + 2596110-2596928 28 6.9
11_06_0264 - 21785450-21786928 27 9.1
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 27 9.1
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 27 9.1
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 48.0 bits (109), Expect = 6e-06
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Frame = +2
Query: 239 AASHAEACTGRM--RAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAM 412
AAS + A G RA + +G L + + P P ++LVR A S+NP+D+ M
Sbjct: 17 AASTSAAAAGEKSCRAVVVPRFGGPEVLEVRQGVPVPDLKPGDVLVRARAVSINPLDLRM 76
Query: 413 IGGYGSKILNTLRTIESGEGIEFPLIAGRDFCGR-S*KGWCGSXXKAWRANLGESYPLIX 589
GYG I + PLI GRD G + G S + G +P
Sbjct: 77 RSGYGRSIFEPV----------LPLIIGRDISGEVAATGTSVSSFTIGQEVFGALHPTAI 126
Query: 590 QGAHSEYVVV 619
+G +++Y ++
Sbjct: 127 RGTYTDYAIL 136
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +2
Query: 236 VAASHAEACTGRMRAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMI 415
V + A M+AW YG + L+L +A P A D++LVRV A+++NP+D
Sbjct: 70 VTTAEAGEVPATMKAWAYDDYGDGSVLKLNDAAAVPDIADDQVLVRVAAAALNPVDAKRR 129
Query: 416 GGYGSKILNTLRTIESGEGIEFPLIAGRDFCG 511
G + L T+ + + AGR G
Sbjct: 130 AGKFKATDSPLPTVPGYDVAGVVVKAGRKVKG 161
>09_04_0643 +
19176561-19176644,19176761-19176902,19178084-19178172,
19178470-19179195
Length = 346
Score = 34.7 bits (76), Expect = 0.060
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 242 ASHAEACTGRMRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPID 403
A+ A+A MRA + YG E L+ VP P E+L+++ A+S+NPID
Sbjct: 2 AAAADAAPKTMRAVQYDKYGGGPE-GLKHVEVPIPAPKEGELLIKMEAASINPID 55
>09_04_0641 +
19172370-19172459,19172539-19172680,19172951-19173039,
19173096-19173806
Length = 343
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 272 MRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPID 403
MRA + YG E L+ VP P E+L+++ A+S+NPID
Sbjct: 14 MRAVQYDGYGGGAE-GLKHVEVPIPSPKKGEVLIKMEAASINPID 57
>11_03_0153 +
10834388-10834813,10835731-10836012,10836153-10836322,
10836431-10836528,10836770-10838133
Length = 779
Score = 31.5 bits (68), Expect = 0.56
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 221 GQQLRVAASHAEACTGRMRAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPI 400
G +L S A+ CT +A + A L +AR+ PLRAP V + N I
Sbjct: 376 GNKLYGRLSAADVCTPVHKALALEAARRGVVLLKNDARLLPLRAPTVASAAVIGHNANDI 435
Query: 401 DVAMIGGY 424
+A++G Y
Sbjct: 436 -LALLGNY 442
>04_03_0566 +
17209455-17209565,17210159-17210203,17211456-17211569,
17211943-17212081,17212324-17212415,17213245-17213517
Length = 257
Score = 30.7 bits (66), Expect = 0.97
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 272 MRAWRIHAYGPTT-ELRLEEARVPPLRAPDEILVRVHASSVNPID 403
MRA + YG L+ E VP ++ E+L++V A+SVNPID
Sbjct: 74 MRAVQYTGYGGGAGALKHVEIPVPSVKK-HEVLIKVEAASVNPID 117
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 272 MRAWRIHAYGP-TTELRLEEARVPPLRAPDEILVRVHASSVNPIDV 406
MRA + YG L+ E VP ++ DE+LV+V A+S+N D+
Sbjct: 10 MRAVQYSGYGGGAAALKFVEIPVPSVKK-DEVLVKVEAASINQSDL 54
>09_04_0636 +
19150966-19151037,19151150-19151291,19151404-19151492,
19151589-19152308
Length = 340
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 269 RMRAWRIHAYGPTTELRLEEARVP-PLRAPDEILVRVHASSVNPID 403
RMRA + YG + L+ VP P E+L+++ A S+N +D
Sbjct: 7 RMRAVQYDKYGGGAQA-LKHVEVPIPTPKKGEVLIKMEAGSINQVD 51
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 446 LRTIESGEGIEFPLIAGRDFCGRS*KGWCGSXXKAWR-ANLGESYP 580
++TIE EGI F + GR G + + W+ A LG S P
Sbjct: 225 VKTIERSEGIPFYRVGAGAGLGRGQNGHGNNGRRPWKAAGLGASVP 270
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 254 EACTGRMRAWRIHAYGPTTELRLEEARVPPLRAPDEILVRVHASSVNPIDVAMIGGYGSK 433
+A GR W + TT + +EE R PP P + AS+ I VA +GG G
Sbjct: 359 DASNGR---WHVEHAVATTGVEVEEIRTPP---PPPLATA--ASTATAISVAGLGGCGDV 410
Query: 434 IL 439
L
Sbjct: 411 AL 412
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 296 YGPTTELRLEEARVPPLRAPDEILVRVHASSVNPID 403
YG +RL+E PD++ ASS N ID
Sbjct: 2521 YGNVVSVRLDEGAPQETMQPDQLNANNEASSTNEID 2556
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 221 GQQLRVAASHAEACTGRMRAWRIHA 295
G++LR AA+ A A RM+ W + A
Sbjct: 11 GEKLRCAAAPAAAARSRMKLWMVRA 35
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,409
Number of Sequences: 37544
Number of extensions: 262448
Number of successful extensions: 542
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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