Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B04
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 221 3e-58
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 219 2e-57
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 92 4e-19
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 92 4e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 68 7e-12
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 67 1e-11
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 64 1e-10
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 54 7e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 41 9e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 41 9e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 41 9e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.005
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 35 0.058
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.058
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.058
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.058
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.058
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 35 0.058
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.23
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.54
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 31 0.94
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 30 1.6
AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical ... 30 1.6
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 30 1.6
AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical... 29 2.2
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 2.9
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 2.9
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 29 3.8
U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical pr... 29 3.8
U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical pr... 29 3.8
U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1 dual-specif... 29 3.8
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 29 3.8
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 29 3.8
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 29 3.8
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 221 bits (541), Expect = 3e-58
Identities = 113/137 (82%), Positives = 122/137 (89%), Gaps = 8/137 (5%)
Frame = +2
Query: 80 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 259
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 260 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 415
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 416 VDFSSEVTAALRVTDGA 466
VDFSSEVTAALRVTDGA
Sbjct: 121 VDFSSEVTAALRVTDGA 137
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/50 (70%), Positives = 38/50 (76%)
Frame = +3
Query: 504 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNV 653
QTETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NV
Sbjct: 150 QTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINV 199
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 219 bits (534), Expect = 2e-57
Identities = 112/137 (81%), Positives = 121/137 (88%), Gaps = 8/137 (5%)
Frame = +2
Query: 80 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 259
MVNFTVDEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTR
Sbjct: 1 MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTR 60
Query: 260 KDEQDRCITIKSTAISMFFELEEKDLVFITNPDQRE------KSEK--GFLINLIDSPGH 415
KDEQ+RCITIKSTAIS+FFELE+KDL F+ +Q E K EK GFLINLIDSPGH
Sbjct: 61 KDEQERCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGH 120
Query: 416 VDFSSEVTAALRVTDGA 466
VDFSSEVTAAL VTDGA
Sbjct: 121 VDFSSEVTAALGVTDGA 137
Score = 72.5 bits (170), Expect = 2e-13
Identities = 35/50 (70%), Positives = 38/50 (76%)
Frame = +3
Query: 504 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNV 653
QTETVLRQAIAERIKP+LFMNKMDR +QTFQRIVEN+NV
Sbjct: 150 QTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTFQRIVENINV 199
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 91.9 bits (218), Expect = 4e-19
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +2
Query: 131 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 310
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 311 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 460
E LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 504 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 650
QTE ++RQ I IL +NK+DR YQ R++E VN
Sbjct: 123 QTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVN 171
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 91.9 bits (218), Expect = 4e-19
Identities = 52/110 (47%), Positives = 70/110 (63%)
Frame = +2
Query: 131 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 310
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 311 FFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 460
E LINLIDSPGHVDFS EVT+AL ++D
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSD 108
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 504 QTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 650
QTE ++RQ I IL +NK+DR YQ R++E VN
Sbjct: 123 QTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVN 171
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/110 (38%), Positives = 62/110 (56%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 313
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 314 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
+G+L+NLID+PGHVDFS+EV+ +L V DG
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDG 128
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 67.7 bits (158), Expect = 7e-12
Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
Frame = +2
Query: 113 MMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITI 289
+MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +I
Sbjct: 125 LMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSI 184
Query: 290 KSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
KS +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 185 KSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 227
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 507 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 650
TE +R AI ER+ L ++K+DR Y + I++ VN
Sbjct: 242 TERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVN 289
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 66.9 bits (156), Expect = 1e-11
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 292
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 293 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADG 102
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 507 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVN 650
TE +R AI ER+ L ++K+DR Y + I++ VN
Sbjct: 117 TERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVN 164
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 63.7 bits (148), Expect = 1e-10
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 307
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 308 MFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
+ + KG INLID+PGHVDF EV +RV DG
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDG 116
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 54.4 bits (125), Expect = 7e-08
Identities = 41/111 (36%), Positives = 56/111 (50%)
Frame = +2
Query: 134 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 313
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 314 FELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGA 139
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 108
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 109 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 148
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/108 (28%), Positives = 50/108 (46%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI A + +E
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITI--NAFHLEYE 109
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
++ I P + ++ N+I ++ + V AA TDG
Sbjct: 110 TAKRHYAHIDCPGHAD-----YIKNMITGAAQMEGAILVVAA---TDG 149
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 38.3 bits (85), Expect = 0.005
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 128 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 307
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 308 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGA 466
+ E EE+ +T R E I L+D+PGH DF S + D A
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 275
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 38.3 bits (85), Expect = 0.005
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 128 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 307
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 308 MFFELEEKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGA 466
+ E EE+ +T R E I L+D+PGH DF S + D A
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAA 293
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.058
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
E L ++ D S+ F+ N+I +D + V AA TDG
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDG 144
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 34.7 bits (76), Expect = 0.058
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 295
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 296 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 34.7 bits (76), Expect = 0.058
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 295
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 296 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.058
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 295
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 296 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.058
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 295
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 296 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGA 466
+ + E + + I + ++ K + I +ID+PGH DF + D A
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCA 112
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.7 bits (76), Expect = 0.058
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI I
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITINVAHIGY--- 103
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDG 463
E L ++ D S+ F+ N+I +D + V AA TDG
Sbjct: 104 --ESPLRRYSHTDCPGHSD--FIKNMICGTSQMDVAVLVIAA---TDG 144
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 116 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 211
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 119 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 244
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +3
Query: 171 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSSSLKRKI*YSSQ 350
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S +
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPSEASAVMRTGVH 328
Query: 351 TLTS 362
T TS
Sbjct: 329 TSTS 332
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 348 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 172
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 171 P 169
P
Sbjct: 102 P 102
>AL031627-6|CAA20958.1| 338|Caenorhabditis elegans Hypothetical
protein Y102A5C.15 protein.
Length = 338
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 402 SIKLIKKPFSLFSRWSGFVMNTKSFSSSSKNIEMAVDLMVMQ 277
S+ L+ PF L +R +G+ + FSS S + MAV ++ +Q
Sbjct: 68 SVTLLGIPFILATRLAGYSLGLLKFSSYSFLVTMAVSVLSLQ 109
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 348 VMNTKSFSSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 172
V N K++S N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 171 P 169
P
Sbjct: 102 P 102
>AL132862-30|CAB60565.3| 716|Caenorhabditis elegans Hypothetical
protein Y73F8A.1 protein.
Length = 716
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 65 HKPSKMVNFTVDEIRGMMDKKRN-IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGET 241
H P K+ DE+ M ++KRN + N A+++ + +S+ S I G A
Sbjct: 610 HVPEKVAEDIADEVARMTEQKRNYMENHRDYANLNRRVDQMQESVFSIVDRIEGVNATLQ 669
Query: 242 RFTDTRKDEQD 274
R +QD
Sbjct: 670 TIEKQRVQQQD 680
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 167 DRRGRSQTCCGYSASCPSSHG 105
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 167 DRRGRSQTCCGYSASCPSSHG 105
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/95 (28%), Positives = 40/95 (42%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 319
NM + HVD GKST+ L+ G++ R E + + E+ R S + E
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMV-DKRTLEKYEREAK--EKGRESWYLSWCMDTNDE 167
Query: 320 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF 424
EK E ++ F I +D+PGH F
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTI--LDAPGHKSF 200
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 82 GEFHGRRDPWDDGQEAEYPQHVCDR 156
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 82 GEFHGRRDPWDDGQEAEYPQHVCDR 156
GEFHG WD+ ++EY + DR
Sbjct: 666 GEFHGTTKSWDNITKSEYGTFLLDR 690
>U42848-5|AAN84855.1| 283|Caenorhabditis elegans Hypothetical
protein C31H1.6b protein.
Length = 283
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -2
Query: 525 DAVLFR--FVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKL-IKKPFSLFSRWS 355
+ V+F+ F +T Q + + TRS++ EK C G + L +K P + +
Sbjct: 89 EKVIFKTTFTNTTQREQEYSFKTERCTRSSSTVIIEKGVCRGAEVSLKLKTPCEVVEANA 148
Query: 354 GF----VMNTKSFSSSSKNIEMAVDLMV 283
GF ++N ++S + + VD V
Sbjct: 149 GFTTEVMLNHIGENTSEEELTWGVDSCV 176
>U42848-4|AAA83610.2| 302|Caenorhabditis elegans Hypothetical
protein C31H1.6a protein.
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -2
Query: 525 DAVLFR--FVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKL-IKKPFSLFSRWS 355
+ V+F+ F +T Q + + TRS++ EK C G + L +K P + +
Sbjct: 108 EKVIFKTTFTNTTQREQEYSFKTERCTRSSSTVIIEKGVCRGAEVSLKLKTPCEVVEANA 167
Query: 354 GF----VMNTKSFSSSSKNIEMAVDLMV 283
GF ++N ++S + + VD V
Sbjct: 168 GFTTEVMLNHIGENTSEEELTWGVDSCV 195
>U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform c
protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 543 CARQ*PDAVLFRFVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSL 370
C + P + V TH + P +PSV+ +A + E S+ S P S+
Sbjct: 188 CPPKVPKSASSNCVFPGSTHDESSPSSPSVSEGSAASEPETSSSAASSSSTASAPPSM 245
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 543 CARQ*PDAVLFRFVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSL 370
C + P + V TH + P +PSV+ +A + E S+ S P S+
Sbjct: 292 CPPKVPKSASSNCVFPGSTHDESSPSSPSVSEGSAASEPETSSSAASSSSTASAPPSM 349
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 543 CARQ*PDAVLFRFVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSL 370
C + P + V TH + P +PSV+ +A + E S+ S P S+
Sbjct: 343 CPPKVPKSASSNCVFPGSTHDESSPSSPSVSEGSAASEPETSSSAASSSSTASAPPSM 400
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 543 CARQ*PDAVLFRFVHTHQTHSQQPPRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSL 370
C + P + V TH + P +PSV+ +A + E S+ S P S+
Sbjct: 343 CPPKVPKSASSNCVFPGSTHDESSPSSPSVSEGSAASEPETSSSAASSSSTASAPPSM 400
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 274
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 140 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 274
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,552,370
Number of Sequences: 27780
Number of extensions: 299671
Number of successful extensions: 1034
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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