Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B03
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 70 3e-13
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.0
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.1
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 27 3.1
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 26 4.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 5.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 7.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.5
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 69.7 bits (163), Expect = 3e-13
Identities = 41/128 (32%), Positives = 69/128 (53%)
Frame = +2
Query: 269 SDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQ 448
S DEEE +RVV+S K+KRYEE + +I+N ++ F+ L K +
Sbjct: 162 SSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSSNNWIVVSNEFDHLNKVSQKC----- 216
Query: 449 KEENGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAE 628
+E G P +I L LD + A ++ K+L N +A +L+Q++RK + F+++
Sbjct: 217 -KEAGRNPPPYIEFLSALDQKLESA--DKAFIKSLDAANGRAFNALKQRVRKNNRQFQSD 273
Query: 629 ISKFREDP 652
I ++R+DP
Sbjct: 274 IDRYRKDP 281
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 269 SDDEEETKRVVRSMKE----KRYEELEGIIHSIRNHRKIKDFSSALASFEE-LQKAYTRA 433
S +E E+ V K+ K+ EE+ + + + I DFS++ A F +QK + +
Sbjct: 1548 SSEEAESASVHADTKDLENLKKTEEMLSVTFQVIFNESISDFSTSTADFTTFVQKEWEKR 1607
Query: 434 APVVQKE 454
++QK+
Sbjct: 1608 REILQKD 1614
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/124 (19%), Positives = 49/124 (39%)
Frame = +2
Query: 278 EEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEE 457
+EET ++ + LE + +R K +DF +L E A P +
Sbjct: 598 QEETLIKANETIDQLTKMLEEVSDQLRYSLKERDFFRSLVQENEKLLDMAPATPNSKLNT 657
Query: 458 NGVAPRFFIRALVELDDWVVGAWNEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISK 637
N + + R+L+ L+ NE E+ K++S+ K L+ + + +++
Sbjct: 658 NLIEQTSYQRSLIRLEQLT----NELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTS 713
Query: 638 FRED 649
+
Sbjct: 714 LTSE 717
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +2
Query: 314 EKRYEELEGIIHSIRNHRKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRAL 493
E + L +++S ++H S++ + L K Y+++A V ENG+ + R +
Sbjct: 116 EAAHRFLSSLVNSWKDHIVSMQMISSVLKY--LDKVYSKSADKVPVNENGI---YIFREV 170
Query: 494 VELDDWVVG 520
V L+ + +G
Sbjct: 171 VLLNSFEIG 179
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.6 bits (56), Expect = 3.1
Identities = 30/84 (35%), Positives = 41/84 (48%)
Frame = +2
Query: 365 RKIKDFSSALASFEELQKAYTRAAPVVQKEENGVAPRFFIRALVELDDWVVGAWNEREAR 544
++++ F AL SF Y+ A +V ENG +P I L+EL VG R
Sbjct: 365 KRLRPFDKALKSF-----CYSDALDMVL--ENG-SPVLIITMLIELLH--VGG-----LR 409
Query: 545 KALSKGNSKALTSLRQKLRKYTKD 616
ALS + +LT L LRKY +D
Sbjct: 410 IALSNRDDLSLTPLINFLRKYIRD 433
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 245 APAPVYTFSDDEEETKRVVRSMKEKRYEELEGIIHSIRNHRKIKDFSSALASFEEL 412
AP + + +DD E KR + +++R +HSI R+ + SS S ++
Sbjct: 10 APVSLPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSSHQV 65
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 527 NEREARKALSKGNSKALTSLRQKLRKYTKDFEAEISKFRED 649
N E+ K +K N + + K +KY +AEISKF+ D
Sbjct: 156 NINESYKNETKSNQRLGEDVPSK-KKYPHSMDAEISKFKWD 195
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = -2
Query: 206 PSPSQLQRNDSYLQELVNALSYIKNRVGIQFSSNPLMIDLI-NL*RIERKLSNTDLAHDS 30
P P + Y + L + VG PL I N I RKL + DL H S
Sbjct: 410 PKPRNPKHGGRYAM-YIEWLMQLSEEVGWNIEVEPLRIPSTRNYALIGRKLLSNDLLHSS 468
Query: 29 LHT 21
L T
Sbjct: 469 LST 471
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 7.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 20 TYEVSRGQGLYLRAFFLFATNLLSLSSED--CLKTEYLLCF*YKTKH*LTLVNM 175
T+ S LYL+ +LF+ L S +ED L +E L F Y +H LV +
Sbjct: 1250 TFLESSNPALYLKPQYLFSVQLASDFTEDSFTLTSECLRYFNYGHQHRRGLVTV 1303
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Frame = -1
Query: 531 SFHAPT---TQSSNSTRALMKNLG 469
SFHAPT T SS+ST +L N G
Sbjct: 815 SFHAPTVSSTTSSSSTTSLAANKG 838
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 624 ASKSLVYFLSFCLSEVRALLFPFDRAFRASRSFHAPTTQSSNSTRALMKN 475
ASK + L+ E +LL R AS FHA ++ + L++N
Sbjct: 123 ASKGIGLELALFYEEYGSLLIRMQRWKEASEVFHAAVSREARPLVRLLRN 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,317
Number of Sequences: 5004
Number of extensions: 43808
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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