Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_B01
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    34   0.021
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    28   1.4  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    27   1.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.8  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   1.8  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.1  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    26   4.1  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.2  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 27/82 (32%), Positives = 35/82 (42%)
 Frame = +2

Query: 317 EGVVMELADCALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFK 496
           EG  M+L   A PL           +  KD  A  +     +K G  R DLL AN+ IFK
Sbjct: 59  EGEAMDLNHAA-PLSHETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFK 117

Query: 497 EQGQALDKAARKDVXVLGCWQP 562
           E  + + K   KD  +L    P
Sbjct: 118 EILREVTKYT-KDAILLVATNP 138


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 450 PSFLGIAPTRKAAA--TSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWR 277
           P F  + P RK +A  T+L  SS       P  + RA SANS+T+P   P   A S + R
Sbjct: 516 PQFSAV-PHRKVSAQDTNLMGSSPGMYNHMPYLN-RATSANSITSPGVLPEGMAASLKKR 573

Query: 276 KT 271
            T
Sbjct: 574 TT 575


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 543 SLVVGNPANTNALICSKYAPSIP 611
           ++VV + +   A +CSKY PSIP
Sbjct: 405 AIVVLSTSGNTARLCSKYRPSIP 427


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 411 ATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPI 304
           +T   ++SG     T   SG    + S+TTP+STP+
Sbjct: 574 STITSSASGSTGEFTNTNSGNGDVSGSVTTPTSTPL 609


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 610 GIDGAYLEHIRAFVLAGLPTTK 545
           G+ G+Y EH+    + G+P+TK
Sbjct: 87  GVAGSYAEHVPVVHIVGMPSTK 108


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 610 GIDGAYLEHIRAFVLAGLPTTKD 542
           GI GAY E++   +++G P T D
Sbjct: 89  GIGGAYAENLPVILVSGSPNTND 111


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 610 GIDGAYLEHIRAFVLAGLPTTKD 542
           GI GAY E +   +++G P T D
Sbjct: 94  GIGGAYAEDLPVILISGSPNTND 116


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 357 SGRAQSANSMTTPSSTPIIGAISRRWRKTGC*GPKTAPDAI 235
           + R+ S N   TPSS+P   + SR +       PK + D I
Sbjct: 147 TNRSSSDNGFLTPSSSPRSPSCSRVFNAVQLCSPKKSKDDI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,606
Number of Sequences: 5004
Number of extensions: 48637
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)