Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_B01
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical ... 151 4e-37
AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical ... 151 4e-37
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical ... 28 6.7
Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.8
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 27 8.8
AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical ... 27 8.8
>AF125955-5|AAO12427.1| 273|Caenorhabditis elegans Hypothetical
protein F46E10.10b protein.
Length = 273
Score = 151 bits (366), Expect = 4e-37
Identities = 75/133 (56%), Positives = 95/133 (71%)
Frame = +2
Query: 167 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 346
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 347 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAA 526
ALP L V+ + + AF + AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120
Query: 527 RKDVXVLGCWQPS 565
+ V+ P+
Sbjct: 121 KPTTKVIVVGNPA 133
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 546 LVVGNPANTNALICSKYAP-SIPKENFTXMNSS*SNR 653
+VVGNPANTNA I +KYA IP +NF+ M NR
Sbjct: 127 IVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNR 163
>AF125955-3|AAD14720.1| 336|Caenorhabditis elegans Hypothetical
protein F46E10.10a protein.
Length = 336
Score = 151 bits (366), Expect = 4e-37
Identities = 75/133 (56%), Positives = 95/133 (71%)
Frame = +2
Query: 167 MAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADC 346
M+ P+RV+VTGAAGQI YS++ +IA G VFG +QPV L LLD+ +LEGVV EL DC
Sbjct: 1 MSAPLRVLVTGAAGQIGYSIVIRIADGTVFGKEQPVELVLLDVPQCSNILEGVVFELQDC 60
Query: 347 ALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAA 526
ALP L V+ + + AF + AFLVGAMPR+EGMERKDLLAANV+IFK QG+AL + A
Sbjct: 61 ALPTLFSVVAVTDEKSAFTGIDYAFLVGAMPRREGMERKDLLAANVKIFKSQGKALAEYA 120
Query: 527 RKDVXVLGCWQPS 565
+ V+ P+
Sbjct: 121 KPTTKVIVVGNPA 133
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +3
Query: 546 LVVGNPANTNALICSKYAP-SIPKENFTXMNSS*SNR 653
+VVGNPANTNA I +KYA IP +NF+ M NR
Sbjct: 127 IVVGNPANTNAFIAAKYAAGKIPAKNFSAMTRLDHNR 163
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 35.9 bits (79), Expect = 0.025
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Frame = +1
Query: 175 TYKSCCNWC----CRTNCIL-TSLSN-------CVWSSFWTSTTCLPPPS*YCAYDGCT* 318
TYK C ++C CI T+L++ C SS STTC P + YC YDG T
Sbjct: 453 TYKECQDYCRDARSEPQCIQGTALTDSNGNFIICGGSSA-ASTTC--PANHYCYYDGTTY 509
Query: 319 RCCHGVGRLCSATFGWGSS 375
CC CS ++ G+S
Sbjct: 510 GCCPTQAYTCSLSYKSGAS 528
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = -2
Query: 549 PRTFTSLRAA-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKASSG 385
PRT RA L+K P S R RS + P P T KA + K + G
Sbjct: 290 PRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKTVG 349
Query: 384 FAVGRTPAKSGRAQSANSMTTPSSTP 307
G P+K A A++ T+P+ P
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAP 375
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = -2
Query: 549 PRTFTSLRAA-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKASSG 385
PRT RA L+K P S R RS + P P T KA + K + G
Sbjct: 290 PRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKTVG 349
Query: 384 FAVGRTPAKSGRAQSANSMTTPSSTP 307
G P+K A A++ T+P+ P
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAP 375
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Frame = -2
Query: 549 PRTFTSLRAA-LSKAWPCS-LKMRTLAARRSFLSIPSFLGIAP---TRKAAATSLKASSG 385
PRT RA L+K P S R RS + P P T KA + K + G
Sbjct: 290 PRTAVPSRATVLTKTAPASKAPTRAPVPARSAPAPPRGAPAKPAANTAKAEPIAQKKTVG 349
Query: 384 FAVGRTPAKSGRAQSANSMTTPSSTP 307
G P+K A A++ T+P+ P
Sbjct: 350 KVQGTAPSKPAPAAPASAATSPAPAP 375
>AF014940-1|AAB63933.1| 143|Caenorhabditis elegans Hypothetical
protein W02D7.3 protein.
Length = 143
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 390 SGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAISRRWRKTGC 265
+ +A +P S ++S S + S+TP A+SRR GC
Sbjct: 71 TNYAKRHSPPPSYSSRSKQSSVSSSATPTKSAVSRRNYLAGC 112
>Z19153-3|CAA79547.1| 301|Caenorhabditis elegans Hypothetical
protein C38C10.3 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 478 SSKKILPLHTFLSGH 434
SSKK LP +T+LSGH
Sbjct: 172 SSKKSLPTYTYLSGH 186
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 337 QLHDNTFKYTHHRRNIKKVEEDRLLRSKNCS 245
++HD Y R +K++EE RLL K+CS
Sbjct: 184 KVHDGD--YMKAARQVKELEECRLLHKKDCS 212
>AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical
protein Y43F8C.5 protein.
Length = 245
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 254 KLLQTQFDKEVSMQFVR 204
K+LQ QFDKEV F+R
Sbjct: 33 KMLQEQFDKEVEQHFLR 49
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,669
Number of Sequences: 27780
Number of extensions: 279545
Number of successful extensions: 982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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