Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A23
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    30   0.23 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    29   0.30 
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   2.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   3.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   3.7  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   3.7  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   4.9  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   4.9  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   6.5  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    25   8.6  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   8.6  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   8.6  
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    25   8.6  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 21/82 (25%), Positives = 38/82 (46%)
 Frame = +3

Query: 9   LARIYYTPYSPVWFCLLIKILYPNISMSSLIIVLFVFALAVYKLLRRKTVRWVKTNKYGG 188
           +  ++ T ++     L +   Y  I++S +I  + + AL         T+ W K NKYG 
Sbjct: 397 VTHVFVTIFAVCMGALAVLFNYIGITISWIITFIGI-ALGPAVFGITLTLFWKKMNKYGM 455

Query: 189 VETAILRTAPGPVCWPIIGSLH 254
           +    + +  G VCW  +GS +
Sbjct: 456 IIGCPMGSITGVVCW--VGSCY 475


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 3   SCLARIYYTPYSPVWFCLLIKILYPNISMSSLIIVLFVFALAVYKL 140
           SC  RI YT   P W  L +++L  +  M+ ++ + F  AL ++++
Sbjct: 235 SCCRRIAYTKTPPKW-PLSLRLLLHSFWMAFIVCLTFQIALLIFRV 279


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 117 FALAVYKLLRRKTVRWVKTNKYGGVET 197
           FALA Y L  R T+R ++T++ G + T
Sbjct: 185 FALAFYNLPFRSTIRDLRTDRIGRLTT 211


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 195 TAILRTAPGPVCWPIIGSLHLLGGHESPFQAFTELSKKYGD 317
           T++   A G  C   + S  LL  H+SP   F  +SK  GD
Sbjct: 244 TSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGD 284


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 18  IYYTPYSPVWFCLLIKILYPNISMSSLIIVLFVFALAVYKLLR 146
           ++ +PY  + F  +I +   N S + + +  ++ ALAV + +R
Sbjct: 400 MWVSPYGTLAFSFIINVDAKNFSTTPIALFQYLMALAVVRGIR 442


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = +3

Query: 6   CLARIYYTPYSP-------VWFCLLIKILYPNISMSSL 98
           CL  +Y+    P        W C  +K+LYP IS   L
Sbjct: 17  CLLPLYHATRDPSLAKREWTWICKELKLLYPEISKHGL 54


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 209 DRTGARLLAHYRESTPSGRP 268
           D   AR +AH +ESTP  +P
Sbjct: 235 DEKIARFIAHLKESTPDKKP 254


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 177 KYGGVETAILRTAPGPVCWPIIGSLHLLGGHE 272
           KY GV    L    G   WP+   + L+GGHE
Sbjct: 41  KYTGVCHTDLHALQGD--WPLPAKMPLIGGHE 70


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 234 PIIGSLHLLGGHESPFQAFTELSKKYGDIFS 326
           P +GS    G    P+  F E   KYGD+F+
Sbjct: 41  PFVGSAVAYG--MDPYVFFRECRAKYGDVFT 69


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 349 QSALPNLTLK-MSPYFFDSSVKAWKGDS 269
           Q AL N+  K +  +FF++  + WKGDS
Sbjct: 269 QEALCNIRRKGIDIFFFEAFDEDWKGDS 296


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 240 IGSLHLL--GGHESPFQAFTELSKKYGDIFSVKLGSADCVVVNNLSLIREVLNQNGNV 407
           +G  H++  GG ++  Q+   L+K  G I  +   +++    N  S+I ++LN+N N+
Sbjct: 233 VGYHHVIEVGGEKTLPQSIACLAKD-GMISMIGFVASEGTTPNLTSIIGQILNRNANI 289


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 GSLHLLGGHESPFQAFTELSKKYGDI 320
           G L+ L  H S F    ++ KKYG+I
Sbjct: 179 GDLNDLSMHSSMFGFLAKIEKKYGNI 204


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 282 QAFTELSKKYGDIFSVKLGSADCVVVNNLSLIREVLNQNGNVVAGRPDFLRFHKLFAGDG 461
           Q   +L+K  GD F ++ G+   V +  + L +    ++ NVV  RPD  +  +     G
Sbjct: 166 QHVVQLNK--GDWF-IQDGANSMVGIATIQLAKHFGYKSINVVRNRPDIEKLKEQLKSLG 222

Query: 462 YSLALCDGHLTARE 503
            ++ + D  L  R+
Sbjct: 223 ATIVITDEELMDRK 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,030
Number of Sequences: 5004
Number of extensions: 41846
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)