Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A23
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 KTVRWVKTNKYGGVETAILR 209
           KTV W+K  K  G+E A+LR
Sbjct: 337 KTVSWLKDGKPLGLEEAVLR 356


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 245 PDNGPANGPRCGP*NGRLDSAIF 177
           P   PA+ P C   NG   SA F
Sbjct: 885 PSYKPASTPGCSSKNGEPTSAAF 907


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 201 WPSRLRHIYS 172
           WPS LR IYS
Sbjct: 213 WPSDLRTIYS 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,069
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)