Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A16
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   3.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   3.8  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   5.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   6.7  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   6.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.7  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    24   8.8  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   8.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    24   8.8  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  STVSIK*YGPLFYLAGNVRGWVL 138
           S + +K +GP +YL+  + GW L
Sbjct: 99  SVLLVKKFGPHYYLSAMIIGWSL 121


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 104 FIWLVTFVAGFWIFKKIKEWQNLPPGPWGLPIVGYLPFIDRYHPHITLTNL 256
           F+WL     GFW+ + I   + LP   +  P++G LPF   Y   + LT L
Sbjct: 105 FVWLEVAWGGFWVSRVIA--RLLPYILY--PLMGILPF-TMYKYTVILTAL 150


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 157 LYFFENPKPSHERYQPNKIKVHIT**IQLILVGYR 53
           +Y +   +P       +K+ VH+   I L+L GYR
Sbjct: 192 MYMYNEIRPEVSMLMSHKLAVHVLGKIFLLLDGYR 226


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 212 PFIDRYHPHITLTNLSKTYG 271
           PF++ +HP ++L   S  YG
Sbjct: 595 PFLNHFHPTVSLLAKSLVYG 614


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 118 NVRGWVLDFQKNKGMAEFAPRTLGVTYRRLFAFH*SLSSTYHLDK 252
           NV   +   Q+ + +A+F        Y  L + H  +++T HL+K
Sbjct: 227 NVEVLLYLLQQEESLAQFDLNGKSFLYHMLVSLHNQVTNTSHLEK 271


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 47   VLTIPN*YQLYLSSNMDLYFIWLVT 121
            +L+I N  +LYL+ N +   +W++T
Sbjct: 1459 ILSITNSQRLYLAKNTEETEVWMLT 1483


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 148 FENPKPSHERYQPNKIKVHIT 86
           F +PKP+H  Y+ NK   +++
Sbjct: 345 FSSPKPAHRFYELNKTSSNLS 365


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 96  TFILFGW*RSW-LGFGFSKK*RNGRICPPDLGGYLSSVICLSLIAI 230
           T  L+G+  SW L + + K      +   +LGGY + +ICL  + +
Sbjct: 350 TSTLYGYTPSWALSWSYRKD-----LIMQELGGYNADIICLQEVDV 390


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  LVSTTFGLLVLTIPN*YQLYLSS 88
           L+ T +G  +  +PN YQL+ +S
Sbjct: 500 LMGTVYGAWISLVPNVYQLWRNS 522


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 122 FVAGFWIFKKIKEWQNLPP-GPWGLPIVGYLPFIDRYHP 235
           ++   ++ K++ E + L   GPW +PI+ Y   +D   P
Sbjct: 808 YIFNDFLVKEVTEEEALTVHGPWKIPIIVYYEKLDTKIP 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,680
Number of Sequences: 5004
Number of extensions: 36637
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)