Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A16
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   6.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   6.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   6.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   8.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 74  LYLSSNMDLYFIWLVT-FVAGFWIFKKIKEWQNLPPGPWGLPIVG 205
           ++++S+   ++ W  T   A      K K    +P GP+ LPI G
Sbjct: 20  IFVTSHRPAWWFWTATSHEASAPAEGKFKTVSKVP-GPFSLPIFG 63


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 187 PRSGGQILPFLYFFENPKP 131
           P+SG     F  F +NP+P
Sbjct: 176 PKSGKGFSLFARFLKNPRP 194


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 GGYLSSVICLSLIAI 230
           GG LSSV+ LSL ++
Sbjct: 13  GGRLSSVLSLSLTSL 27


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 GGYLSSVICLSLIAI 230
           GG LSSV+ LSL ++
Sbjct: 13  GGRLSSVLSLSLTSL 27


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 GGYLSSVICLSLIAI 230
           GG LSSV+ LSL ++
Sbjct: 13  GGRLSSVLSLSLTSL 27


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 GGYLSSVICLSLIAI 230
           GG LSSV+ LSL ++
Sbjct: 13  GGRLSSVLSLSLTSL 27


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 186 GGYLSSVICLSLIAI 230
           GGYL  + CL+++ +
Sbjct: 379 GGYLLGIQCLTVVCL 393


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 130 SHERYQPNKIKV 95
           +H+RY PN +++
Sbjct: 805 AHDRYLPNSLRI 816


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 292 HFETVNSSVC 263
           HF+ +NS+VC
Sbjct: 395 HFQPLNSAVC 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,525
Number of Sequences: 438
Number of extensions: 2898
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)