Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A15
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    41   1e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    38   8e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    36   0.002
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    31   0.066
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.35 
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    28   0.82 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   0.82 
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    27   1.1  
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    26   2.5  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   4.4  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    25   4.4  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.8  
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   5.8  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   5.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   5.8  

>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +3

Query: 177 LLSLIVLAVTLIFWWIFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTXTSMK 347
           +++ I++   +    IF  R T++    +V L+G SDSGKT LF  L Y + + T  S++
Sbjct: 11  IVATIIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIE 70

Query: 348 ENIEEYITSNKTLKIVDLPGQERLR 422
            N  E +       +VDLPG  R +
Sbjct: 71  PN--EAVWKYGAW-LVDLPGHPRAK 92


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 225 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTXTSMKENIEEYITSNKTLKIVDL 401
           FSR ++ +   +L++GL  +GKT +  +L  +Q   T  ++  N+E     N    + D+
Sbjct: 13  FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72

Query: 402 PGQERLRNKFXEQHKSSAKGIV 467
            GQ+++R      + +  KG++
Sbjct: 73  GGQDKIR-PLWRHYFTGTKGLI 93


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 36.3 bits (80), Expect = 0.002
 Identities = 21/91 (23%), Positives = 47/91 (51%)
 Frame = +3

Query: 195 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTXTSMKENIEEYITS 374
           L+++ +F  +F +R      +L++GL  +GKT +  +L   +   T  ++  N+E     
Sbjct: 3   LSISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59

Query: 375 NKTLKIVDLPGQERLRNKFXEQHKSSAKGIV 467
           N +  + D+ GQ+++R      +  + +GI+
Sbjct: 60  NISFTVWDVGGQDKIR-PLWRHYFQNTQGII 89


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 31.5 bits (68), Expect = 0.066
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 255 VLLMGLSDSGKTLLFVRLAYSQYRQTXTSMKENIEEYITSNKTLKIVDLPGQERLRNKFX 434
           VLL+GL ++GKT +   L      +   +    I           I D+ GQ+ LRN F 
Sbjct: 19  VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FW 77

Query: 435 EQHKSSAKGIV 467
           + +  S + I+
Sbjct: 78  KNYFESTEAII 88


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 463 IPLALLLCCSKNLFLSLSCPGRSTIFNVLLEVIYSSIFSFI 341
           +P+A +L C   +      P RST++N L EV  S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 252 SVLLMGLSDSGKTLLFVRLAYSQYRQTXTSMKENIEEYITSNKTLKIVDLP 404
           S L  G S +GKTLL   LA   +      ++ ++ EY+  +   +++  P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 165  RYITLLSLIVLAVTLIFWWIFS 230
            +YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461


>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +3

Query: 255 VLLMGLSDSGKTLLFVRLAYSQYRQTXTSMKENIEEYITSNKTLKIVDLPGQERLRNKFX 434
           +L +GL ++GKT L   L   +      ++    EE    N      DL G ++ R +  
Sbjct: 23  MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLW 81

Query: 435 EQHKSSAKGIV 467
             +     GIV
Sbjct: 82  RDYFPEVNGIV 92


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
 Frame = +3

Query: 237 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTXTS---MKENIEEYITSNKT--LKIVD 398
           ++LR   ++ +G    GKT L  R  Y Q+  T  +   +    +     ++T  L++ D
Sbjct: 7   FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66

Query: 399 LPGQERLRNKFXEQHKSSAKGIV 467
             GQER R+      + S+  I+
Sbjct: 67  TAGQERFRSLIPSYIRDSSVAII 89


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 255 VLLMGLSDSGKTLLF--VRLAYS 317
           VLL+G  DSGKT +   +RL YS
Sbjct: 77  VLLLGAGDSGKTTIMKQMRLLYS 99


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 189 IVLAVTLIFWWIF--SRRYTLRNSVLLMGL 272
           +   +TL+F+W+F  SRR   + ++L+ G+
Sbjct: 48  VFFLLTLVFYWVFDLSRRRATQLTILVCGV 77


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 90  KRKNSTMESEVVKEKIHTEPILNDPRYITLLSLIVLAVTLIFWW 221
           +R +ST + +   +   T P+++  +   L S++V A+  I+W+
Sbjct: 58  RRFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWY 101


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +3

Query: 240 TLRNSVLLMGLSDSGKT---LLFVRLAYSQYRQTXTS---MKENIEEYITSNKTLKIVDL 401
           T+   ++L+G S  GK+   L FV+  +  YR++      + + +     ++  L+I D 
Sbjct: 12  TINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDT 71

Query: 402 PGQERLRNKFXEQHKSSAKGIV 467
            GQER ++     ++++   IV
Sbjct: 72  AGQERYKSLAPMYYRNANCAIV 93


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 243 LRNSVLLMGLSDSGK----TLLFVRLAYSQYRQTXTSMK-ENIEEYITSNKTLKIVDLPG 407
           +R  VLLMG S SGK    +++F        R+   ++  E+       N  L + D  G
Sbjct: 1   MRKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGG 60

Query: 408 QERLRNKF 431
           QE     +
Sbjct: 61  QEAFMENY 68


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 195 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLL 296
           L + L F  +FS+    R+ VLL G   +GKTLL
Sbjct: 671 LQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLL 704


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 175 VMYRGSFRIGSV*IFSLTTSDSIVEFFRFTLTKSL 71
           + YRG  RIG   +   T +D+ ++  +F +TK L
Sbjct: 893 IFYRGVKRIGYARLHRSTITDTELQTGKFLVTKDL 927


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,188
Number of Sequences: 5004
Number of extensions: 30286
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)