Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A10
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    31   0.098
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   0.69 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   3.7  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   4.9  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   6.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   6.5  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   6.5  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    25   6.5  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   8.5  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.5  

>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.098
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 197 EARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELE 376
           EA+  +  AER A K  TKS+ ++   S  + E G  G +    P    AP   ++E +E
Sbjct: 656 EAKRQKVQAEREAAKAATKSEAEKQKPS-GKFEEGTGGRAPPPPPAEEVAPENEEVETME 714

Query: 377 L 379
           +
Sbjct: 715 I 715


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 474 EXKFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSICGSTGAAG 337
           E   +D    T+T+  N T T S  +  +   ++SSS   ++GAAG
Sbjct: 499 ETSILDSTNTTSTNATNTTTTTSSSSTASSSASASSSTSATSGAAG 544


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 483 LGPEXKFIDDIVATTTSMHNVTGTNSL 403
           LGP+  FID+  +T+  +H +    SL
Sbjct: 10  LGPKTSFIDNRTSTSRPLHEIPSYQSL 36


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 134 SESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQ 289
           S+   DL A EH  +++   +   P     +R+  K  +   +   YGS+ Q
Sbjct: 426 SQRSHDLAANEHAPILNPKNSALNPRLVTNDRVKVKSPSLIQSSTGYGSMSQ 477


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 396 WRAPYFNSSSSICGSTGAAGTRGCWAIEAP 307
           WR  +     S+   + AA TR C+A+ +P
Sbjct: 256 WRVGWLIGDESLIKYSAAAHTRICFAVNSP 285


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 474 EXKFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSIC 358
           E  F  +++A +T+ HN+     LM     Y+ S S++C
Sbjct: 825 EAAFGSNVLAASTARHNLEIDLRLMLEMKNYWGSISALC 863


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 305 SGASIAQQPRVPAAPVEPQIE 367
           S +   Q+P +PAA +EP+++
Sbjct: 615 SASFTTQKPELPAAKIEPEVQ 635


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -3

Query: 492 NIHLGPEXKFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSICGSTGAAGTRG 328
           N   G E   +  + ATT +   V G  S   WR     S++ I  STGAA   G
Sbjct: 165 NDTFGIEEGLMTTVHATTATQKTVDGP-SKKDWRGGRGASANIIPSSTGAAKAVG 218


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = -3

Query: 492 NIHLGPEXKFIDDIVATTTSMHNVTGTNSLMTWRAPYFNSSSSICGSTGAAGTRG 328
           N   G E   +  + ATT +   V G  S   WR     S++ I  STGAA   G
Sbjct: 165 NDTFGIEEGLMTTVHATTATQKTVDGP-SKKDWRGGRGASANIIPSSTGAAKAVG 218


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 215 ELAERIARKRKTKSDNQ--RSYGSVEQIE 295
           ELA+R+AR +K + D +  +  G+ E ++
Sbjct: 97  ELAKRVARHQKAREDQEETKEVGTAEMVD 125


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 361 LWFHWCCWNSRLLGNRSPRWA---TFNLFYTAIGAL 263
           +WF W C+NS  L   + R A   T  L  ++ GAL
Sbjct: 280 IWFAWLCFNSGTLLTVNIRTAYIMTNTLISSSFGAL 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,804
Number of Sequences: 5004
Number of extensions: 33030
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)