Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_A10
(503 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40380-1|AAB05895.1| 374|Homo sapiens presenilin I-374 protein. 71 2e-12
U40379-1|AAB05894.1| 463|Homo sapiens presenilin I-463 protein. 71 2e-12
L76517-1|AAB46370.1| 463|Homo sapiens presenilin 1 protein. 71 2e-12
BC011729-1|AAH11729.1| 463|Homo sapiens PSEN1 protein protein. 71 2e-12
AK223173-1|BAD96893.1| 463|Homo sapiens presenilin 1 isoform I-... 71 2e-12
L76528-1|AAB46371.1| 467|Homo sapiens presenilin 1 protein. 68 2e-11
L42110-1|AAB46416.1| 467|Homo sapiens S182 protein. 68 2e-11
D84149-1|BAA20883.1| 113|Homo sapiens presenilin 1 protein. 68 2e-11
AJ008005-1|CAA07825.1| 184|Homo sapiens minilin protein. 68 2e-11
AF416717-1|AAL16811.1| 378|Homo sapiens presenilin 1 protein. 68 2e-11
AF109907-2|AAC97960.1| 467|Homo sapiens PS1 protein. 68 2e-11
AC004858-2|AAF19254.1| 184|Homo sapiens minilin (short form of ... 68 2e-11
AC004858-1|AAF19253.1| 289|Homo sapiens presenilin 1 protein. 68 2e-11
U50871-1|AAB50054.1| 448|Homo sapiens familial Alzheimer's dise... 68 2e-11
U34349-1|AAC50290.1| 442|Homo sapiens seven trans-membrane doma... 68 2e-11
L44577-1|AAC42012.1| 448|Homo sapiens E5-1 protein protein. 68 2e-11
L43964-1|AAB59557.1| 448|Homo sapiens STM-2 protein. 68 2e-11
BT006984-1|AAP35630.1| 448|Homo sapiens presenilin 2 (Alzheimer... 68 2e-11
BC006365-1|AAH06365.1| 448|Homo sapiens PSEN2 protein protein. 68 2e-11
AL391628-2|CAH73111.1| 481|Homo sapiens presenilin 2 (Alzheimer... 68 2e-11
AL391628-1|CAH73110.1| 448|Homo sapiens presenilin 2 (Alzheimer... 68 2e-11
AF416718-1|AAL16812.1| 390|Homo sapiens presenilin 2 transcript... 68 2e-11
BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I poly... 27 2.8
BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I poly... 27 2.8
AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein. 27 3.0
BC043144-1|AAH43144.1| 1163|Homo sapiens regulating synaptic mem... 31 3.0
BC018057-1|AAH18057.1| 359|Homo sapiens RIMS2 protein protein. 31 3.0
AB018294-1|BAA34471.2| 1200|Homo sapiens KIAA0751 protein protein. 31 3.0
BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein. 27 3.1
BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein. 30 4.0
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha... 30 4.0
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp... 30 4.0
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp... 30 4.0
AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein. 30 4.0
AB058773-1|BAB47499.1| 832|Homo sapiens KIAA1870 protein protein. 30 4.0
AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens ... 27 5.2
AM235214-1|CAJ84625.1| 416|Homo sapiens RhD protein protein. 29 9.2
AK026969-1|BAB15608.1| 355|Homo sapiens protein ( Homo sapiens ... 29 9.2
>U40380-1|AAB05895.1| 374|Homo sapiens presenilin I-374 protein.
Length = 374
Score = 70.9 bits (166), Expect = 2e-12
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEE 370
A+ D L+ + + + +++RS G E + G P G S R E + EE
Sbjct: 14 AQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEE 68
Query: 371 LELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
L LKYGA+HVI LFVPVTLCM+VVVATI S++ Y+
Sbjct: 69 LTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYT 103
>U40379-1|AAB05894.1| 463|Homo sapiens presenilin I-463 protein.
Length = 463
Score = 70.9 bits (166), Expect = 2e-12
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEE 370
A+ D L+ + + + +++RS G E + G P G S R E + EE
Sbjct: 14 AQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEE 68
Query: 371 LELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
L LKYGA+HVI LFVPVTLCM+VVVATI S++ Y+
Sbjct: 69 LTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYT 103
>L76517-1|AAB46370.1| 463|Homo sapiens presenilin 1 protein.
Length = 463
Score = 70.9 bits (166), Expect = 2e-12
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEE 370
A+ D L+ + + + +++RS G E + G P G S R E + EE
Sbjct: 14 AQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEE 68
Query: 371 LELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
L LKYGA+HVI LFVPVTLCM+VVVATI S++ Y+
Sbjct: 69 LTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYT 103
>BC011729-1|AAH11729.1| 463|Homo sapiens PSEN1 protein protein.
Length = 463
Score = 70.9 bits (166), Expect = 2e-12
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEE 370
A+ D L+ + + + +++RS G E + G P G S R E + EE
Sbjct: 14 AQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEE 68
Query: 371 LELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
L LKYGA+HVI LFVPVTLCM+VVVATI S++ Y+
Sbjct: 69 LTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYT 103
>AK223173-1|BAD96893.1| 463|Homo sapiens presenilin 1 isoform I-463
variant protein.
Length = 463
Score = 70.9 bits (166), Expect = 2e-12
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEE 370
A+ D L+ + + + +++RS G E + G P G S R E + EE
Sbjct: 14 AQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEE 68
Query: 371 LELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
L LKYGA+HVI LFVPVTLCM+VVVATI S++ Y+
Sbjct: 69 LTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYT 103
>L76528-1|AAB46371.1| 467|Homo sapiens presenilin 1 protein.
Length = 467
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>L42110-1|AAB46416.1| 467|Homo sapiens S182 protein.
Length = 467
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>D84149-1|BAA20883.1| 113|Homo sapiens presenilin 1 protein.
Length = 113
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>AJ008005-1|CAA07825.1| 184|Homo sapiens minilin protein.
Length = 184
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>AF416717-1|AAL16811.1| 378|Homo sapiens presenilin 1 protein.
Length = 378
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>AF109907-2|AAC97960.1| 467|Homo sapiens PS1 protein.
Length = 467
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>AC004858-2|AAF19254.1| 184|Homo sapiens minilin (short form of
presenilin 1) protein.
Length = 184
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>AC004858-1|AAF19253.1| 289|Homo sapiens presenilin 1 protein.
Length = 289
Score = 68.1 bits (159), Expect = 2e-11
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 RKRKTKSDNQRSYGSVEQIEGG-PSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLF 412
R+R+ +D +RS G E + G P G S R E + EEL LKYGA+HVI LF
Sbjct: 33 RERQEHND-RRSLGHPEPLSNGRPQGNS-----RQVVEQDEEEDEELTLKYGAKHVIMLF 86
Query: 413 VPVTLCMLVVVATISSINXYS 475
VPVTLCM+VVVATI S++ Y+
Sbjct: 87 VPVTLCMVVVVATIKSVSFYT 107
>U50871-1|AAB50054.1| 448|Homo sapiens familial Alzheimer's disease
protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>U34349-1|AAC50290.1| 442|Homo sapiens seven trans-membrane domain
protein AD3LP/AD5 protein.
Length = 442
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>L44577-1|AAC42012.1| 448|Homo sapiens E5-1 protein protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>L43964-1|AAB59557.1| 448|Homo sapiens STM-2 protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>BT006984-1|AAP35630.1| 448|Homo sapiens presenilin 2 (Alzheimer
disease 4) protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>BC006365-1|AAH06365.1| 448|Homo sapiens PSEN2 protein protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>AL391628-2|CAH73111.1| 481|Homo sapiens presenilin 2 (Alzheimer
disease 4) protein.
Length = 481
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 38 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 92
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 93 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 146
>AL391628-1|CAH73110.1| 448|Homo sapiens presenilin 2 (Alzheimer
disease 4) protein.
Length = 448
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>AF416718-1|AAL16812.1| 390|Homo sapiens presenilin 2 transcript
variant 2 protein.
Length = 390
Score = 67.7 bits (158), Expect = 2e-11
Identities = 46/115 (40%), Positives = 58/115 (50%)
Frame = +2
Query: 131 MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
M+ + E T+LM AE+ R E R+ +N + S E E G
Sbjct: 5 MASDSEEEVCDERTSLMS---AESPTPRSCQE--GRQGPEDGENTAQWRSQENEEDGEED 59
Query: 311 ASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
VP P + EEL LKYGA+HVI LFVPVTLCM+VVVATI S+ Y+
Sbjct: 60 PDRYVCSGVPGRPPGLE-EELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYT 113
>BC126303-1|AAI26304.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 182 DGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIE 295
+GHI +A + A+ KRK K + + Y S E+ E
Sbjct: 1397 EGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEE 1434
Score = 22.2 bits (45), Expect(2) = 2.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 EGGPSGASIAQQPRVPAAPVEPQ-IEELELKYGARHVIKLFV 415
E PS ++ QPR P EPQ E +E + A I F+
Sbjct: 1471 EEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFI 1512
>BC117173-1|AAI17174.1| 1720|Homo sapiens polymerase (RNA) I
polypeptide A, 194kDa protein.
Length = 1720
Score = 27.1 bits (57), Expect(2) = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 182 DGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIE 295
+GHI +A + A+ KRK K + + Y S E+ E
Sbjct: 1397 EGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEE 1434
Score = 22.2 bits (45), Expect(2) = 2.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 EGGPSGASIAQQPRVPAAPVEPQ-IEELELKYGARHVIKLFV 415
E PS ++ QPR P EPQ E +E + A I F+
Sbjct: 1471 EEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFI 1512
>AC012511-1|AAY24277.1| 922|Homo sapiens unknown protein.
Length = 922
Score = 27.1 bits (57), Expect(2) = 3.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 182 DGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIE 295
+GHI +A + A+ KRK K + + Y S E+ E
Sbjct: 599 EGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEE 636
Score = 22.2 bits (45), Expect(2) = 3.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 EGGPSGASIAQQPRVPAAPVEPQ-IEELELKYGARHVIKLFV 415
E PS ++ QPR P EPQ E +E + A I F+
Sbjct: 673 EEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFI 714
>BC043144-1|AAH43144.1| 1163|Homo sapiens regulating synaptic
membrane exocytosis 2 protein.
Length = 1163
Score = 30.7 bits (66), Expect = 3.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 176 LMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQ 328
L D I+ R DR +R +R+ +NQRSY S+E+ +S AQ+
Sbjct: 186 LEDSRISMLRMDRPSRQRSISERRAAMENQRSY-SMERTREAQGPSSYAQR 235
>BC018057-1|AAH18057.1| 359|Homo sapiens RIMS2 protein protein.
Length = 359
Score = 30.7 bits (66), Expect = 3.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 176 LMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQ 328
L D I+ R DR +R +R+ +NQRSY S+E+ +S AQ+
Sbjct: 186 LEDSRISMLRMDRPSRQRSISERRAAMENQRSY-SMERTREAQGPSSYAQR 235
>AB018294-1|BAA34471.2| 1200|Homo sapiens KIAA0751 protein protein.
Length = 1200
Score = 30.7 bits (66), Expect = 3.0
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 176 LMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQ 328
L D I+ R DR +R +R+ +NQRSY S+E+ +S AQ+
Sbjct: 198 LEDSRISMLRMDRPSRQRSISERRAAMENQRSY-SMERTREAQGPSSYAQR 247
>BC017115-1|AAH17115.2| 574|Homo sapiens POLR1A protein protein.
Length = 574
Score = 27.1 bits (57), Expect(2) = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 182 DGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIE 295
+GHI +A + A+ KRK K + + Y S E+ E
Sbjct: 251 EGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEE 288
Score = 22.2 bits (45), Expect(2) = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 293 EGGPSGASIAQQPRVPAAPVEPQ-IEELELKYGARHVIKLFV 415
E PS ++ QPR P EPQ E +E + A I F+
Sbjct: 325 EEDPSLPALLTQPRKPTHSQEPQGPEAMERRVQAVREIHPFI 366
>BC059174-1|AAH59174.1| 625|Homo sapiens TRAF3IP1 protein protein.
Length = 625
Score = 30.3 bits (65), Expect = 4.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVE-----QIEG--GPSGASIAQQPRVPAAPV 352
++A + E++ R ++ TK+ +RS SVE EG GP+G ++ P P P
Sbjct: 324 SKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSDAEGDAGPAGQDKSEVPETPEIPN 383
Query: 353 E 355
E
Sbjct: 384 E 384
>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
chain precursor protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 369 SSICGSTGAAGTRGCWAIEAPDGPP 295
S + G G G+RG W ++ P GPP
Sbjct: 1582 SGLPGPKGDKGSRGDWGLQGPRGPP 1606
>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha 1
protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 369 SSICGSTGAAGTRGCWAIEAPDGPP 295
S + G G G+RG W ++ P GPP
Sbjct: 1582 SGLPGPKGDKGSRGDWGLQGPRGPP 1606
>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha 1
protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 369 SSICGSTGAAGTRGCWAIEAPDGPP 295
S + G G G+RG W ++ P GPP
Sbjct: 1582 SGLPGPKGDKGSRGDWGLQGPRGPP 1606
>AF230877-1|AAF76984.1| 625|Homo sapiens MIP-T3 protein.
Length = 625
Score = 30.3 bits (65), Expect = 4.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 194 AEARPDRELAERIARKRKTKSDNQRSYGSVE-----QIEG--GPSGASIAQQPRVPAAPV 352
++A + E++ R ++ TK+ +RS SVE EG GP+G ++ P P P
Sbjct: 324 SKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSDAEGDAGPAGQDKSEVPETPEIPN 383
Query: 353 E 355
E
Sbjct: 384 E 384
>AB058773-1|BAB47499.1| 832|Homo sapiens KIAA1870 protein protein.
Length = 832
Score = 30.3 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 369 SSICGSTGAAGTRGCWAIEAPDGPP 295
S + G G G+RG W ++ P GPP
Sbjct: 554 SGLPGPKGDKGSRGDWGLQGPRGPP 578
>AK025568-1|BAB15171.1| 495|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21915 fis, clone HEP03920. ).
Length = 495
Score = 27.1 bits (57), Expect(2) = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 182 DGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIE 295
+GHI +A + A+ KRK K + + Y S E+ E
Sbjct: 172 EGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEEEE 209
Score = 21.4 bits (43), Expect(2) = 5.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 293 EGGPSGASIAQQPRVPAAPVEPQ 361
E PS ++ QPR P EPQ
Sbjct: 246 EEDPSLPALLTQPRKPTHSQEPQ 268
>AM235214-1|CAJ84625.1| 416|Homo sapiens RhD protein protein.
Length = 416
Score = 29.1 bits (62), Expect = 9.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 376 LQLLNLWFHWCCWNSRLLGNRSPRWATFNLFYTAIGALI 260
L L LW W +NS LL + R A FN +Y +++
Sbjct: 211 LGALFLWMFWPSFNSALLRSPIERNAVFNTYYAVAVSVV 249
>AK026969-1|BAB15608.1| 355|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23316 fis, clone HEP12031. ).
Length = 355
Score = 29.1 bits (62), Expect = 9.2
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +2
Query: 89 CLLTKCEHYSKDN*MSESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKT------ 250
C TK + ++ D+ A + + +D + R D ER+ R R T
Sbjct: 8 CNQTKIMAKKRSTIKTDLDDDITALKQRSFVDAEVDVTR-DIVSRERVWRTRTTILQSTG 66
Query: 251 KSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQI 364
K+ ++ + ++ ++ G + Q+P AAPV+P +
Sbjct: 67 KNFSKNIFAILQSVKAREEGRAPEQRPAPNAAPVDPTL 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,231,892
Number of Sequences: 237096
Number of extensions: 1318329
Number of successful extensions: 4656
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 3859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4641
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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