Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_A10
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 56 1e-08
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 56 1e-08
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 56 1e-08
U64846-4|AAG24111.1| 327|Caenorhabditis elegans Serpentine rece... 31 0.63
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 29 1.4
U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine rece... 29 1.4
U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine rece... 29 1.4
U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyos... 29 2.5
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 29 2.5
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 5.8
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 5.8
L25598-8|AAY86212.1| 185|Caenorhabditis elegans Hypothetical pr... 27 5.8
AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical ... 27 5.8
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2
Query: 353 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
E +EE ELKYGA HVI LFVPV+LCM +VV T+++I YS
Sbjct: 35 ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2
Query: 353 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
E +EE ELKYGA HVI LFVPV+LCM +VV T+++I YS
Sbjct: 35 ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +2
Query: 353 EPQIEELELKYGARHVIKLFVPVTLCMLVVVATISSINXYS 475
E +EE ELKYGA HVI LFVPV+LCM +VV T+++I YS
Sbjct: 35 ENVVEEAELKYGASHVIHLFVPVSLCMALVVFTMNTITFYS 75
>U64846-4|AAG24111.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein38 protein.
Length = 327
Score = 30.7 bits (66), Expect = 0.63
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 257 DNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCML 436
DN YGS++ I A Q + +P I L++ YG V+ L++P+ ML
Sbjct: 2 DNILKYGSIDNIPMYNCSARTPSQWTLETGEPQPIIGSLQVAYGI-IVLTLYIPIAFIML 60
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 269 SYGSVEQ--IEGGPSGASIAQQPRVPAAPVEP 358
SYG+ E IE P G+ I+QQ VP PV+P
Sbjct: 576 SYGNHEDSVIEEEPHGSVISQQQVVPPRPVQP 607
>U64846-7|AAG24116.2| 327|Caenorhabditis elegans Serpentine
receptor, class t protein37 protein.
Length = 327
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 272 YGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCML 436
YGS+++I A Q + +P I L++ YG V+ L++P+ L ML
Sbjct: 7 YGSIDRIPMYNCSARTPDQWTLETGEPQPIIGPLQVAYGI-IVLTLYIPIALIML 60
>U64846-3|AAG24114.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein36 protein.
Length = 327
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 272 YGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELELKYGARHVIKLFVPVTLCML 436
YGS+++I A Q + +P I L++ YG V+ L++P+ L ML
Sbjct: 7 YGSIDRIPMYNCSARTPSQWTLETGEPQPIIGPLQVAYGI-IVLTLYIPIALIML 60
>U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical
protein T19D12.6 protein.
Length = 779
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 444 TTTSMHNVTGTNSLMTWRAPYFNSSSSI 361
TTT + T T S +TW+ +FN +S++
Sbjct: 370 TTTPAPSSTSTKSSITWKVAHFNGNSNV 397
>AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform c protein.
Length = 536
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 197 EARPDRELAERIARKRK----TKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQI 364
E P+ E+ E+ K++ T + VE ++GG + + +V A V +
Sbjct: 39 EKEPEEEIVEKTEEKQEEEDVTVKLEDETETEVESVDGGQEEKEVVDEKQVDAERVNTKT 98
Query: 365 EELELK 382
EEL K
Sbjct: 99 EELSPK 104
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +2
Query: 197 EARPDRELAERIARKRK----TKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQI 364
E P+ E+ E+ K++ T + VE ++GG + + +V A V +
Sbjct: 39 EKEPEEEIVEKTEEKQEEEDVTVKLEDETETEVESVDGGQEEKEVVDEKQVDAERVNTKT 98
Query: 365 EELELK 382
EEL K
Sbjct: 99 EELSPK 104
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 134 SESGSDLDATEHTALMDGHIAEARPDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSG 310
++ + D H GH E+ P R LA+ ARKR + SY S + G +G
Sbjct: 1347 NQGSAPTDRQCHQCHRIGHFVESCPQRALAKE-ARKRFGSNSTNSSYRSNDSGRGFKNG 1404
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 206 PDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELE 376
P+ E E + S Q +V+ + P G ++ + P + E +EELE
Sbjct: 877 PEAEPPEEVTTPSGIMSTTQNDMTTVDSMPSTPGGGTLTRGPATGSPIDETTVEELE 933
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 206 PDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELE 376
P+ E E + S Q +V+ + P G ++ + P + E +EELE
Sbjct: 877 PEAEPPEEVTTPSGIMSTTQNDMTTVDSMPSTPGGGTLTRGPATGSPIDETTVEELE 933
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 206 PDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELE 376
P+ E E + S Q +V+ + P G ++ + P + E +EELE
Sbjct: 877 PEAEPPEEVTTPSGIMSTTQNDMTTVDSMPSTPGGGTLTRGPATGSPIDETTVEELE 933
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +2
Query: 206 PDRELAERIARKRKTKSDNQRSYGSVEQIEGGPSGASIAQQPRVPAAPVEPQIEELE 376
P+ E E + S Q +V+ + P G ++ + P + E +EELE
Sbjct: 877 PEAEPPEEVTTPSGIMSTTQNDMTTVDSMPSTPGGGTLTRGPATGSPIDETTVEELE 933
>L25598-8|AAY86212.1| 185|Caenorhabditis elegans Hypothetical
protein C06G4.6 protein.
Length = 185
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 378 NSSSSICGS-TGAAGTRGCWAIEAPDGPPSIC 286
N S+CG G +GC + P+GP C
Sbjct: 78 NVGGSVCGEGAGFVNQQGCSMVNTPNGPCYFC 109
>AC084153-5|AAK84584.1| 108|Caenorhabditis elegans Hypothetical
protein Y22D7AL.10 protein.
Length = 108
Score = 27.5 bits (58), Expect = 5.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 209 DRELAERIARKRKTKSD---NQRSYGSVEQIEGGPSGASIA-QQPRVPAAPVEPQIEELE 376
DR L ER+A + KTK ++S G V + +GA + ++ + A V+P L
Sbjct: 21 DRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELVALTVKPGDRVLL 80
Query: 377 LKYGARHVI 403
+YG V+
Sbjct: 81 PEYGGTKVV 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,834
Number of Sequences: 27780
Number of extensions: 195735
Number of successful extensions: 832
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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