Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A04
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    29   0.78 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.5  
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces...    25   7.3  
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    25   9.6  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.6  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   9.6  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 355  DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 516
            +++  I S+L + +   Y   + + +AD A+    QP GD L    +W ++  T
Sbjct: 857  EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 509  LYLTHIVYLFSLSPTGCT 456
            +Y  H+VY+ SLSP  C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 225 RYGQDLPVHVSGLPTLRYFYKDRAGHNGNRDEQGDVPASQFDARSAPR 368
           +Y  D+P +VS LP  R  Y     + G  DE+     +  D  S+P+
Sbjct: 796 QYHVDMPDNVSDLPQTRLCYGACVYNVGLLDEEKRKDLANSDLNSSPK 843


>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 114

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 325 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 447
           ET LQ N+T   L +++ V PD   +K IG T   Q  + AK
Sbjct: 26  ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 585 GAQERIETFHLISDRYGHRVPFQSLL 508
           GA   I TFH++ D    R+P   ++
Sbjct: 65  GATSAISTFHILKDEIIRRIPLLPII 90


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 352 QDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNK 486
           QD+L+D+ +  P   + K  GT+   D   ++W     V D L +
Sbjct: 479 QDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEWFYNPDVDDDLER 523


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 106 QWSPVYTVKGLL 141
           QWSPVYT+K  L
Sbjct: 96  QWSPVYTMKSAL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,718
Number of Sequences: 5004
Number of extensions: 61046
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)