Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_A01
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 77 4e-15
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 75 2e-14
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 74 3e-14
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 66 5e-12
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 27 2.9
08_01_0455 + 4012857-4013735 27 3.8
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 27 3.8
03_02_0207 - 6411324-6412895 27 5.0
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 26 6.6
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 26 8.7
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291... 26 8.7
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 77.0 bits (181), Expect = 4e-15
Identities = 33/54 (61%), Positives = 42/54 (77%)
Frame = +3
Query: 72 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSE 233
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY +
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHD 95
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 205 KNFSSNTTANLASXPFFPGSXKXMNSGPVVPMVLEG 312
K F+ +L PFF G ++SGPV+ MV EG
Sbjct: 86 KEFAQKHYHDLKDRPFFNGLCDFLSSGPVLAMVWEG 121
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/58 (56%), Positives = 41/58 (70%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSEFGIXAFLP 257
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY++ F P
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFP 59
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 202 QKNFSSNTTANLASXPFFPGSXKXMNSGPVVPMVLEG 312
+++F+ A+L+ PFFPG + + SGPVV MV EG
Sbjct: 41 ERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEG 77
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 74.1 bits (174), Expect = 3e-14
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSEFGIXAFLPWV 263
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY + F P +
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 264 X*XNEFRTCGP 296
E+ T GP
Sbjct: 63 I---EYITSGP 70
Score = 32.7 bits (71), Expect = 0.076
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 205 KNFSSNTTANLASXPFFPGSXKXMNSGPVVPMVLEG 312
K+ + +L PFFPG + + SGPVV M EG
Sbjct: 43 KDLAQEHYKDLKEKPFFPGLIEYITSGPVVCMAWEG 78
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 66.5 bits (155), Expect = 5e-12
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +3
Query: 84 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSEFGIXAF 251
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY++ F
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPF 59
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 202 QKNFSSNTTANLASXPFFPGSXKXMNSGPVVPMVLEG 312
+K+F+ A+L+S PFF G + + SGPVV MV EG
Sbjct: 43 EKSFAEKHYADLSSKPFFGGLVEYIVSGPVVAMVWEG 79
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 158 FETFNNGAHKTTLYTIRLNHNKSTL 84
+ F +K T+YT+RL+HN+ L
Sbjct: 421 YRAFTWAEYKRTMYTLRLSHNRLDL 445
>08_01_0455 + 4012857-4013735
Length = 292
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 156 RNVQ*WCPQDHVVHHQA 106
R V WCPQD V+ H+A
Sbjct: 166 RCVATWCPQDRVLRHRA 182
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 158 FETFNNGAHKTTLYTIRLNHNKSTLTLFR 72
+ +F +KTT+Y++RL+H S L LF+
Sbjct: 363 YRSFTWAEYKTTMYSLRLSH--SRLELFK 389
>03_02_0207 - 6411324-6412895
Length = 523
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 66 MMAEQRERTFIMVKPDGVQRGLV---GTIIERFEKKGF 170
+++ Q RTF++ +P GV RG++ +ERF + GF
Sbjct: 65 VLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 113 IRLNHNKSTLTLFRHHEILXT 51
+RL+H LT+F++HE+ T
Sbjct: 446 VRLDHGLQMLTIFKNHEVETT 466
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 141 IIERFEKKGFKLVGLKFVWPSEEL 212
+IE + G L G++F+W SEE+
Sbjct: 127 MIEIWRAAGMNLDGVEFLWSSEEI 150
>08_01_0325 +
2917942-2918193,2919057-2919340,2919453-2919549,
2919677-2919712,2920570-2920715,2920882-2920987,
2921160-2921219,2921848-2921898
Length = 343
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 141 IIERFEKKGFKLVGLKFVWPSEEL 212
+IE + G L G++F+W SEE+
Sbjct: 131 MIEIWRAAGMNLDGVEFLWSSEEI 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,500,855
Number of Sequences: 37544
Number of extensions: 146233
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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