Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A01
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   2.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.2  

>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 311 PSKTIGTTGPEFIXLXDPGKKGXD 240
           P+K+I    PE +   DPG+   D
Sbjct: 109 PTKSILEKKPELVDATDPGEHNGD 132


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 86  LTLFRHHEILXTCSIN 39
           L + +HH  +  CS+N
Sbjct: 123 LQMTKHHNFIKVCSVN 138


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 191 RMAIRRTSPATLQRIWHPG 247
           +++++   P     IWHPG
Sbjct: 133 QLSLKNIEPYNNYYIWHPG 151


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +2

Query: 191 RMAIRRTSPATLQRIWHPG 247
           +++++   P     IWHPG
Sbjct: 133 QLSLKNIEPYNNYYIWHPG 151


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 127 PRCTPSGLTIIKVRSRCSAIMK 62
           P C P  +     R RCS+ ++
Sbjct: 41  PGCVPKPIPSYACRGRCSSYLQ 62


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 107 LNHNKSTLTLFRHHEI 60
           LNH  S++TL+R+  +
Sbjct: 89  LNHKFSSVTLYRNKTV 104


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 119 YTIRLNHNKSTLTLFRHHEILXTCSI 42
           Y +  + +K T T+  +H I   CS+
Sbjct: 61  YPLPYSGSKCTWTITSYHRINLKCSL 86


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 GFKLVGLKFVWPSE 206
           GF++   K +WPS+
Sbjct: 203 GFRVDAAKHMWPSD 216


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 193 TNFKPTSLKPFFSKRSIMVPTRPRC 119
           T   P S+K   +   ++VP++P C
Sbjct: 387 TEENPKSIKSGDAAIVMLVPSKPMC 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,111
Number of Sequences: 438
Number of extensions: 1552
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)