Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_P24
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.2  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   7.2  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   9.5  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 420 NQKVKRYHVHGRGGE*NPDLLSVSKQFSVL 331
           N+ +  YHV G GG   PD++S+ +  ++L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNIL 564


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 460 SNNLLFLKYAASKKIPLII--STGMVDKTAVKTIYDIISSDHKQFCLLHCISAY 615
           SN + F  +  S ++  +I  S G  D      +YDI+ +++   CLL  ISAY
Sbjct: 419 SNTVSFDNFFNSLELIFVIMSSNGFTD-----IMYDIMDAEYFVSCLLFIISAY 467


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 517 STGMVDKTAVKTIYDIISSDHKQFCLLHCISAYPVP 624
           S  +     ++ +  +I + H   CLLH +S  P P
Sbjct: 178 SHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTP 213


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 229 EKFTKKYLERPYDNPNSWGKTYG 297
           +  +K  L RP+  PN W  T G
Sbjct: 190 DNLSKDRLLRPFQGPNKWPSTAG 212


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 199 CVKFQKTCLGEKFTKKYLERPYDNPNS 279
           C K+ + C+  +F +K     Y+N NS
Sbjct: 33  CQKYNENCVYRQFYRKIKRLKYNNDNS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,787
Number of Sequences: 5004
Number of extensions: 54470
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)