Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_P09
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    26   0.37 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   4.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +3

Query: 363 NGRKLVLKEETGNER-RMHTSRPQHREGR---NNRDDKDNWGINKPREP--ENLNTYGLS 524
           N R+     ET  ER R  T R + +E +   NN    +N+  N        N NT    
Sbjct: 52  NKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKK 111

Query: 525 LQFLESINV-QPPLVKKVFVAN 587
           LQ+   IN+ Q P+   ++  N
Sbjct: 112 LQYYNIINIEQIPVPVPIYCGN 133


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 369 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 488
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 89  REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 130



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 369 RKLVLKEETGNERRMHTS--RPQHREGRNNRDDKDNWGINKP 488
           R+  L+ E GN R ++ S  RP H   R   + +   G N+P
Sbjct: 145 REAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRP 186


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 369 RKLVLKEETGNERRMHTSRPQHREGRNNRDDKDNWGINKP 488
           R+   + E GN R ++  +P+    R  R+ +   G N+P
Sbjct: 90  REAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 390 ETGNERRMHTSRPQHREGRNNRDDKDNWGINKP 488
           E GN R ++  +P+    R  R+ +   G N+P
Sbjct: 123 EPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,868
Number of Sequences: 438
Number of extensions: 3313
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)