Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_P02
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    29   3.2  
04_04_1171 - 31455136-31455482,31455805-31458982                       29   3.2  
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630...    28   5.6  
02_01_0735 + 5484398-5484400,5484670-5484773,5485012-5485138,548...    28   5.6  

>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
            24273725-24273826,24273912-24274088,24274193-24274398,
            24274491-24274575,24274641-24274798,24274873-24274948,
            24275117-24275245,24275313-24275457,24275561-24275691,
            24276183-24276335,24276447-24276636,24277006-24277139,
            24277248-24277406,24277659-24277964,24278040-24278216,
            24278446-24278529,24278592-24278822,24278913-24279002,
            24279090-24279211,24279293-24279448,24279477-24279635,
            24279705-24279765,24280004-24280138,24280384-24280471,
            24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 522  RESDGPHILCPLNNIYFTLGGAIVTLYST*NCT--FFTSPGLITKSVLLII 376
            R  D   I+  L N  F L   +V +Y T NCT     +PG   +S+ + +
Sbjct: 1274 RTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFAESMKITL 1324


>04_04_1171 - 31455136-31455482,31455805-31458982
          Length = 1174

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 287 SLW-LRVHFDNHTIAFKNCLGSVTQENIFEFMINRTDFVINPGEVK 421
           ++W L ++ +N T A  +C+G ++   IFE  +N  D  + P   K
Sbjct: 162 AMWALALNVNNLTGAIPSCIGDLSNLEIFEAYLNNLDGELPPSMAK 207


>12_02_0943 -
           24662147-24662195,24662440-24662834,24662979-24663057,
           24663129-24663250,24663363-24663449,24663543-24663891,
           24664227-24664540
          Length = 464

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 48  CYGVFPTKQVREVNNDFFKCYINCELYPXHCCSYCWCQL 164
           C   F   +++ + +   K     +LY  HCC  C+ Q+
Sbjct: 377 CGSPFSESELQNLESTKHKAQKKIDLYTAHCCQSCYFQI 415


>02_01_0735 +
           5484398-5484400,5484670-5484773,5485012-5485138,
           5485212-5485306,5485597-5485720,5486523-5486603,
           5487177-5487275,5487416-5487583,5487688-5487775,
           5487860-5487930,5488000-5488068,5488368-5488499,
           5488740-5488946
          Length = 455

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 209 FEYDTSIQHPGRWYGVIKLSSDYTIHSLWLRVHFDNHTIAFKNCLGSVTQEN-IFEFM 379
           FE D +   P  +Y  + +    T+H   L V   N+  AFK  +G+VT E+ IFE +
Sbjct: 219 FEGDHNSPRPQSYYDSVSMFFYNTLHPPQLPVKCSNNLGAFK--VGTVTNESFIFEII 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,917
Number of Sequences: 37544
Number of extensions: 368633
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)