Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O21
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    27   1.4  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    27   2.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   3.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   5.6  
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    25   5.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   7.3  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   7.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.7  

>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 321 LVISLKKDKTVSFLRFPFRPQRRK 250
           LV+ L K KT++  + P RP RRK
Sbjct: 5   LVVGLNKGKTLTKRQLPERPSRRK 28


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 86  MGSYAKFVSDYCKNWDKSGRELFLKHLTQFTKDEHRTPLFSKSGKMSGFSQS 241
           +G Y  F++     ++ +GR L LK L Q  +++ R  ++S SG     SQS
Sbjct: 400 IGPYLVFMASTINGYEGTGRSLSLKLLQQL-REQSR--IYSGSGNNKSDSQS 448


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 14  NWRSRV*YRWNNLLKTIRSPFIVTMGSYAKFVSDY-CKNWDKSGRELFLKHL-TQFTKDE 187
           N + ++ Y  + L K    P +VT   Y     DY   + +KSG+   ++ L T + K  
Sbjct: 583 NGKRQMLYGIDILRKICNHPDLVTR-EYLLHKEDYNYGDPEKSGKLKVIRALLTLWKKQG 641

Query: 188 HRTPLFSKSGKM 223
           HRT LFS++ +M
Sbjct: 642 HRTLLFSQTRQM 653


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 449 ISDKLLKERLEIDTLQD 499
           + D++L+ERL + TLQD
Sbjct: 358 VQDRVLRERLTVKTLQD 374


>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 321 LVISLKKDKTVSFLRFPFRPQRRK 250
           LV+ L K K ++  + P RP RRK
Sbjct: 5   LVVGLNKGKVLTKRQLPERPSRRK 28


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = +2

Query: 158 KHLTQFTKDEHRTPLFSKSGKMSGFSQSVYDFLLCGLKGNLKKDTVLSFLREITNLH 328
           +HL Q ++D+++ P+ ++  K   +SQ  +      L   L ++ +   ++ + N H
Sbjct: 364 RHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTH 420


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 263 HKEENHRHFEKIQTFSQTLKIVESYVHLL*IASNVSRTILDQI 135
           H+   H + + I+  S   K+ ESY  L  I SNV   I  +I
Sbjct: 222 HESNRHINDQLIRLLSYETKLKESYPSLKRIVSNVFDRIEKEI 264


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 2    DC*NNWRSRV*YRWNNLLKTIR 67
            DC N  + R   RW +LLK++R
Sbjct: 1033 DCQNKRKQRWRNRWESLLKSVR 1054


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,681
Number of Sequences: 5004
Number of extensions: 45249
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)