Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O21
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    32   0.35 
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082...    27   0.37 
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772...    30   1.4  
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    28   5.6  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    28   5.6  
01_01_0339 + 2720647-2720790,2721241-2721282,2721580-2721761,272...    27   7.5  

>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 95  YAKFVSDYCKNWDKSGRELFLKHLTQFTKDEHRT 196
           Y K V++ C  WD  G +LF KHL+   + EH+T
Sbjct: 205 YVKNVANICSVWDM-GLKLFRKHLSLSPEIEHKT 237


>05_07_0008 -
           27007919-27007944,27008070-27008127,27008218-27008292,
           27008417-27008470,27008574-27008840,27008913-27009193,
           27009268-27009409,27009491-27009601,27009975-27010013,
           27010173-27010310,27010415-27010552,27011438-27011562,
           27011702-27011723
          Length = 491

 Score = 26.6 bits (56), Expect(2) = 0.37
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 107 VSDYCKNWDKSGRELFLKHLTQFTKDEHRTPLFSKSGKMSGF 232
           +SDYC+N  K   E F  ++ Q   D H    + K  + +GF
Sbjct: 388 ISDYCRNPGKPSEE-FAAYIKQRGYDLHDVKTYGKMLEDAGF 428



 Score = 23.8 bits (49), Expect(2) = 0.37
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 206 SKSGKMSGFSQSVYDFLLCGLKGNLKKDTVLSFLR 310
           +K   M+ F+Q  YD ++ G    LK+ +   F+R
Sbjct: 454 NKEAFMADFTQEDYDDIVNGWNAKLKRSSADLFVR 488


>10_05_0004 +
           7717748-7717798,7718107-7718317,7719424-7720079,
           7721296-7721469,7721562-7721678,7722820-7722999,
           7723244-7723290,7724068-7724401
          Length = 589

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
 Frame = +2

Query: 47  NLLKTIRSPFIVTMGSYAKFVSDYCKNWDKSGRELFLKHLTQFTKDEHRTPLFSKSGKMS 226
           N L TI S   V++ S    +SD      KS +   L  L   +K      +  +  +++
Sbjct: 279 NHLATIASTHSVSIESLDDSISDA-----KSNKNDLLPSLELVSKMIQDVEVLEEKAEVA 333

Query: 227 GFSQSVYDFLLCGLKGNLKKDTVLSFLREITNLHADVPXXXXXXXXXXXAETSLDVQ--S 400
               S+    +    G LK+  +L+  +E  ++HA               E    +Q  S
Sbjct: 334 KHESSIAGTSILTKVGKLKE--MLNHAKEANDMHACEVFGEKSILTTEARELQSRLQRLS 391

Query: 401 DERAYFCYIVRELEPFISDKLLKERLEIDTLQD 499
           DER  +  ++ E+   +  +L+  + EID  ++
Sbjct: 392 DERKNYLVVIEEIRQTLEHRLVAAQQEIDAAEE 424


>07_01_1146 +
           10756897-10757065,10763869-10765521,10765638-10765900,
           10766057-10766266,10766818-10767036,10767379-10768344,
           10768575-10768670,10768772-10768870,10769349-10769538,
           10769623-10769855
          Length = 1365

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 80  VTMGSYAKFVSDYCKNWDKSGRELFLKHLTQFTKDEHRTPLFSKSGKMSG 229
           V +G    F+S  CK   + G+ L +      T + H  PL S+   +SG
Sbjct: 538 VAVGFLFSFLSPLCKGVIEPGKTLSISEDLVHTDNVHNMPLSSRRETLSG 587


>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 182 DEHRTPLFSKSGKMSGFSQSVYDFLLCGLKGNLKKDTVLS 301
           DE    LFS   ++S + + +YD L C L   +  D VL+
Sbjct: 259 DEFGGHLFSSLPEVSEYIEPLYDALFCPLTNQVMTDPVLT 298


>01_01_0339 +
           2720647-2720790,2721241-2721282,2721580-2721761,
           2721828-2721939,2722814-2722867,2723077-2723115,
           2723116-2723186,2723313-2723394,2723493-2723589,
           2723727-2723797
          Length = 297

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 266 GHKEENHRHFEKIQTFSQTLKIVESYVHLL*IASNVSRTILDQICP-SFYSNQIRILR 96
           GH E  +   E+   F+QT  I+E++ H+L     +S +I + I     Y N ++++R
Sbjct: 138 GH-EAVYAAIERHLLFAQTAAIMETHSHILVTPLIISWSITESITSWKIYYNSLQVIR 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,592
Number of Sequences: 37544
Number of extensions: 248684
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)