Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O10
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    29   0.62 
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   3.3  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   5.8  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   5.8  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    25   5.8  
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    25   7.6  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 389 RSQKQLMDEISNGHESTIKIEYVNEAEKDSSE-PELTRDSVYEEVE 523
           R QK+ +DE  NG  S I     N  +KD+ E P +  +S YEE E
Sbjct: 60  REQKEELDEEENGKPSQISAFISNGHQKDTLENPAI--ESSYEESE 103


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 338 DHRFDCNLQSLTGSTKKRSISLTFRRTPLYVPAIYVRTINILNNHIPNSIC 186
           D  F+ N+  +  +T K       + TP   P +  R  +ILN +   S C
Sbjct: 174 DKAFESNMHIIDMATYKPGTVCAVKLTPFINPLVLQRYNSILNQYPVESAC 224


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 224 INILNNHIPNSICI 183
           +N+ N ++PNS+CI
Sbjct: 367 LNVANKYLPNSVCI 380


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/43 (20%), Positives = 24/43 (55%)
 Frame = +2

Query: 257 VYGEMLTKCYAFSWIQLDSEDYNQICDPCIKRLRESCSFRNLV 385
           + G +L  C A++ + +++   + +  P +  LR+ C+++  V
Sbjct: 290 IVGWLLNLCIAYTIVDVNAAMNDDLGQPFVVYLRQVCNYKTTV 332


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 326 QICDPCIKRLRESCSFRNLVIRSQKQLMDEISNGHESTIKIEYVN 460
           Q+    +K  + SC F + + R  +++ DE+  G  S +  E  N
Sbjct: 258 QVTGEIMKLAKPSCKFMHCLPRHPEEVSDEVFYGENSLVFQEAEN 302


>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 314 EDYNQICDPCIKRLRESCSFRNLVIR 391
           E    I D CI   R +C FRN  I+
Sbjct: 38  ESQMDIIDECIGLFRANCFFRNFEIK 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,752
Number of Sequences: 5004
Number of extensions: 39366
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)