Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O10
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   2.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 276 VNISPYTSVCPCHLCSDHKYFK*PYSKQ 193
           ++I  +T  C CHLC   K F  P+  Q
Sbjct: 34  MHIRTHTLPCKCHLCG--KAFSRPWLLQ 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 221 LWSEHKWQGH 250
           +W EH+WQ H
Sbjct: 71  VWLEHEWQDH 80



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 209 YLKYLWSEHKWQGHTEVYG 265
           +L++ W +HK+Q     YG
Sbjct: 72  WLEHEWQDHKFQWDPAEYG 90


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 541 QEHHLKFHFFIHT 503
           ++HHLK H  +HT
Sbjct: 21  RDHHLKTHMRLHT 33


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 393 DLITKFLKLHDSLSL 349
           DL TKFL   DSL L
Sbjct: 498 DLCTKFLMHKDSLGL 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,554
Number of Sequences: 438
Number of extensions: 2714
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)