Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O08
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   270   9e-74
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   270   1e-73
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.9  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    25   9.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  270 bits (663), Expect = 9e-74
 Identities = 130/187 (69%), Positives = 152/187 (81%), Gaps = 1/187 (0%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 405 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 581
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 582 IQRLVTP 602
           IQRLVTP
Sbjct: 178 IQRLVTP 184


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  270 bits (662), Expect = 1e-73
 Identities = 129/187 (68%), Positives = 152/187 (81%), Gaps = 1/187 (0%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 405 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPK 581
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPK
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPK 177

Query: 582 IQRLVTP 602
           IQRLVTP
Sbjct: 178 IQRLVTP 184


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 484 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 579
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 500 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 366
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  PGNGMPEVVRSGGRAQASYLLR 130
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 445 VPNVLPKSVSCSTLAKKMMYVVMSSNACSQLRKEKKTLNPDIRHLRSRG*SP 600
           VP V    VS + +   ++  + + +AC Q +KE + L+    +L S   SP
Sbjct: 25  VPTVAEGGVSVAYVMPNLIPPITTVDACLQYKKEIEQLDSKTTYLMSLYLSP 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,980
Number of Sequences: 5004
Number of extensions: 54258
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)