Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_O07
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   237   6e-64
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   237   1e-63
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   237   1e-63
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.66 
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   2.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.7  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   3.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.5  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   6.2  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   8.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.1  

>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  237 bits (581), Expect = 6e-64
 Identities = 107/160 (66%), Positives = 132/160 (82%)
 Frame = -2

Query: 585 RLIXDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 406
           RL+ D+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159

Query: 405 IQLDIATTKIMDFIKFEXGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 226
           I+L++ T KI  FIKF+     M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FA
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219

Query: 225 TRLNNVFIIGKGTKAYXSLPRGKGIRLTIAEERDKRIAAK 106
           TRL+NVF+IG+  K++ SLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  237 bits (579), Expect = 1e-63
 Identities = 107/160 (66%), Positives = 132/160 (82%)
 Frame = -2

Query: 585 RLIXDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 406
           RL+ D+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159

Query: 405 IQLDIATTKIMDFIKFEXGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 226
           I+L++ T KI  FIKF+     M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FA
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219

Query: 225 TRLNNVFIIGKGTKAYXSLPRGKGIRLTIAEERDKRIAAK 106
           TRL+NVF+IG+  K++ SLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  237 bits (579), Expect = 1e-63
 Identities = 107/160 (66%), Positives = 132/160 (82%)
 Frame = -2

Query: 585 RLIXDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 406
           RL+ D+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+
Sbjct: 100 RLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDT 159

Query: 405 IQLDIATTKIMDFIKFEXGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 226
           I+L++ T KI  FIKF+     M+TGGRN+GRVGTIV RE H GSF+I+H+KD+    FA
Sbjct: 160 IKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFA 219

Query: 225 TRLNNVFIIGKGTKAYXSLPRGKGIRLTIAEERDKRIAAK 106
           TRL+NVF+IG+  K++ SLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 202 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 300
           Y  V+ P  EG     LD+H+   A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 363 KFEXGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 259
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 421 QSQRFHPVRHCNYED 377
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 454 WPHHPLPRPTYQSQR 410
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 224 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPXSNLM 367
           V +  P ES M  + K+   L   T  P RP L+P + +   P S L+
Sbjct: 414 VRERAPEESPMTFLQKKMAALP--TSSPVRPMLKPTLQLQNSPLSKLV 459


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 451 PHHPLPRPTYQSQRFHPVRHCNYEDY 374
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 306 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 211
           G I  RE+ P  + I H   STG T+    N+
Sbjct: 55  GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 448 HHPLPRPTYQSQRFHPVR 395
           H PLPRP  Q +   PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,895
Number of Sequences: 5004
Number of extensions: 41995
Number of successful extensions: 125
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)