Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_O07
(586 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 222 2e-58
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 40 0.001
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.065
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 2.4
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 2.4
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 4.2
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 28 5.6
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 27 9.8
U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical pr... 27 9.8
AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid deplete... 27 9.8
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 222 bits (542), Expect = 2e-58
Identities = 104/160 (65%), Positives = 124/160 (77%)
Frame = -2
Query: 585 RLIXDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 406
R++ D KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP +KVND+
Sbjct: 99 RMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDT 158
Query: 405 IQLDIATTKIMDFIKFEXGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 226
I +I+T KI D +KFE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FA
Sbjct: 159 IVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFA 218
Query: 225 TRLNNVFIIGKGTKAYXSLPRGKGIRLTIAEERDKRIAAK 106
TR++NVF+IGKG KA SLP G GIRL+IAEERDKR+A K
Sbjct: 219 TRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -1
Query: 304 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAG 125
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 124 QAHRS 110
+ H +
Sbjct: 460 EHHHA 464
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 304 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HXAAARQGHPPHH 140
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 38.7 bits (86), Expect = 0.003
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = -1
Query: 313 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HXAAARQGHPPHHR 137
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 136 RGAGQAHRSQGRRA 95
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Frame = -1
Query: 448 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 275
HH + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 274 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAGQAHRS 110
H H G HG H H H G G H H P H G+ H +
Sbjct: 519 HGEHGTHHGHHGEH--HHAPAH-HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 35.9 bits (79), Expect = 0.021
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = -1
Query: 334 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHXAAA 164
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 163 RQGHPP---HHRRGAGQAH 116
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 35.1 bits (77), Expect = 0.037
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -1
Query: 265 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHXAAARQGHPPHHRRGAGQAH 116
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 34.7 bits (76), Expect = 0.049
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -1
Query: 304 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAG 125
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 124 QAHRSQG 104
AH G
Sbjct: 690 GAHHEHG 696
Score = 33.9 bits (74), Expect = 0.085
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Frame = -1
Query: 448 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 272
HH + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 271 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAGQAHRSQ 107
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHH-GHHESHGHGHHAPAHHGHHGE 608
Score = 33.1 bits (72), Expect = 0.15
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = -1
Query: 304 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXA-AARQG-HPPHHRRG 131
HH E H H G HG+H H H H H G H HH G
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAG 619
Query: 130 AGQAHRSQG 104
G H G
Sbjct: 620 YGAHHGHHG 628
Score = 31.9 bits (69), Expect = 0.34
Identities = 29/115 (25%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Frame = -1
Query: 448 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 281
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 280 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAGQAH 116
+ AH G HG H H H H G H + H HH AH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPH---HEHHEHHGDHHHGSHGVHHGHHGTHHSLAH 666
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -1
Query: 304 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQG-HPPHHRRGA 128
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 127 GQAHRSQ 107
H +
Sbjct: 515 HHGHHGE 521
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Frame = -1
Query: 307 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEG----VHXAAARQG- 155
G H P H H G H H HE H+ H G H A A G
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGH 470
Query: 154 HPPHHRRGAGQAHRSQ 107
H HH A H +
Sbjct: 471 HGEHHHAPAHHGHHGE 486
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Frame = -1
Query: 259 AHQGLHGTH----LRHEVEQRVHNRQGHEGVHXA-AARQGHPPHHRRGAGQAHRSQGRRA 95
AH G HG H H H+ H G H GH H A H + A
Sbjct: 453 AHHGHHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 512
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.065
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -1
Query: 265 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGH--PPHHRRGAGQAHRSQG 104
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 30.3 bits (65), Expect(2) = 0.17
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 265 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHH 140
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -1
Query: 250 GLHGTHLRH-EVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAGQAHRSQGR 101
G HG H RH R GH G +R G P G H GR
Sbjct: 283 GRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 21.4 bits (43), Expect(2) = 0.17
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 151 PPHHRRGAGQAHRSQGRRA 95
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 564 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 433
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -1
Query: 280 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQG-HPPHHRRGAGQAHRSQG 104
+R RH H+G HG ++H H H R G H P+ H +
Sbjct: 84 ARRRRHHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRV 143
Query: 103 RRAV 92
+R++
Sbjct: 144 KRSI 147
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 346 LVYDHGRP*LGACGHHRVPRETSRLLRH 263
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 346 LVYDHGRP*LGACGHHRVPRETSRLLRH 263
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 407 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 571
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 208 VHNRQGHEGVHXAAARQGHPPHHRRGAGQAHR 113
VH+ H+G H R+ H HH G H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = -1
Query: 256 HQGLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRG 131
H G TH H+ + GH G H + + H H G
Sbjct: 43 HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 305 APSCPARDIPAPSTLCTSRTPRDTPSP 225
AP CP PAP+ C P TPSP
Sbjct: 107 APCCPPP--PAPAAPCCPPPPPPTPSP 131
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 448 HHPLPRPTYQSQRFHPVRHCNYEDYGLH 365
HH PTY F+P H +Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical
protein F15A8.7 protein.
Length = 472
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = -1
Query: 250 GLHGTHLRHEVEQRVHNRQGHEGVHXAAARQGHPPHHRRGAGQAH 116
G H H E HN H +H + G P R A H
Sbjct: 422 GSHEAHAHSATEHGAHNHSEHHQLHRSIFHHGAPTSIRSQAQVPH 466
>AC006834-7|AAF40003.2| 176|Caenorhabditis elegans Lipid depleted
protein 5 protein.
Length = 176
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -2
Query: 498 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 370
++TG N+P +HD + + D L K + + +++ + MD
Sbjct: 20 LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,226,522
Number of Sequences: 27780
Number of extensions: 258698
Number of successful extensions: 869
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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