Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_N17
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   183   1e-47
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.1  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   5.4  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   5.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   5.4  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   7.2  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  183 bits (446), Expect = 1e-47
 Identities = 83/148 (56%), Positives = 108/148 (72%)
 Frame = +2

Query: 89  ERTFIMVKPDGVQRGLVGTIIERYEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 268
           E+TFI VKPD VQRGL+G II ++E KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 269 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 448
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 449 SAKKEIGLWFTDKEVVGWTPANENXVYE 532
           SA +EI LWF   E+  +    E  +YE
Sbjct: 124 SANREIKLWFQPSEIQVYDRTIEPWIYE 151


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 LNHNKSTLTLFRHHEILLTCSINYTCTTAW 23
           L+H K+T++L  +++      +N+TC   W
Sbjct: 816 LSHMKATISLEGYNDCSEFTGVNFTCEVDW 845


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 363 GLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 247
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -2

Query: 138 TRPRCTPSGLTIIKVRSRCSAIMKYY*RAQLTTRALQPGNDLKSQT 1
           T+P+   S +T+ ++R R +++++Y    Q+   A   GN   +++
Sbjct: 347 TKPKGLHSRITMTEMRRRVASMLEYIGHIQVEMAAQSAGNQSSTKS 392


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +2

Query: 266 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQP--GTIRGDLCIQVGR--NIIH 430
           L++     P++  V  GL +++ G ++   T+P       GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +2

Query: 296 VPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 463
           +  V EG N +  GRQ+L  T+P           + + +G  I     H SD +   + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447

Query: 464 IGLWFTDKEV 493
               F+  E+
Sbjct: 448 SAFGFSAMEL 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,751
Number of Sequences: 5004
Number of extensions: 41490
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)