Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_N10
(340 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc... 89 1e-19
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S... 83 1e-17
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 31 0.036
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 26 1.8
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.5
SPAC343.02 |img1||mitochondrial ribosomal protein subunit L19|Sc... 24 7.3
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 24 7.3
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 23 9.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 23 9.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 9.6
>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 74
Score = 89.4 bits (212), Expect = 1e-19
Identities = 44/67 (65%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Frame = +3
Query: 60 EIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 236
+I DIK FL ARRKDA S +IKKN ++VKFK+RCS++LYTLV+ D +KAEKL+QSLPP
Sbjct: 4 QISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPP 63
Query: 237 GLQVKEV 257
L V EV
Sbjct: 64 DLTVTEV 70
>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
L38|Schizosaccharomyces pombe|chr 1|||Manual
Length = 74
Score = 83.0 bits (196), Expect = 1e-17
Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 60 EIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQSLPP 236
++ DIK FL A R DA S ++KKN VKFK+RCSR+LYTLV+ D +KAEKL+QSLPP
Sbjct: 4 QVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPP 63
Query: 237 GLQVKEV 257
L V EV
Sbjct: 64 ALTVTEV 70
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 31.5 bits (68), Expect = 0.036
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +3
Query: 111 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 260
KS+ + +N P+ K K + T+VITD+E ++ +KQ +P +Q EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 134 VLLYFDRFGVFPPRLN*KVFDIFDFXA 54
VLLY RF V P+L +F FD A
Sbjct: 98 VLLYGPRFSVLSPKLYGGIFITFDIIA 124
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 145 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 276
S S + TP SS N +YL ++ LKK V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202
>SPAC343.02 |img1||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 21 VLVENYSSSTCRXEIKDIKDFLIKARRKDAKSVKIKKN 134
+LVE+YS + + +L++ R + KS + +N
Sbjct: 79 LLVESYSKYPSKDSVNRFAGYLLRIRHRGPKSSILLRN 116
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 66 KDIKDFLIKARRKDAKSVKIKKNPEN 143
K I+D+L K ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 23.4 bits (48), Expect = 9.6
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +3
Query: 6 LDPLTVLVENYSSSTCRXEIKDIKDFLIKARRKDAKSVKIKKNPENVK 149
++ L L +N+S + IK F K + + N EN+K
Sbjct: 477 MEELASLTKNFSGAEIAGLIKSASSFAFYRHIKVGTTAAVSGNLENIK 524
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 23.4 bits (48), Expect = 9.6
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +3
Query: 81 FLIKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 245
F+ K R+ KSVKIK K P+ +K + + TDK K K +
Sbjct: 891 FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949
Query: 246 VKEVK*CN 269
V+ +K N
Sbjct: 950 VQAIKQIN 957
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -1
Query: 223 CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 131
C+ F + ++ TR++ +L +TL T SGF
Sbjct: 988 CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,208
Number of Sequences: 5004
Number of extensions: 17060
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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