Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_N10
         (340 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p pro...   120   6e-28
AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA ...   120   6e-28
AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA ...    28   3.6  
AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associat...    28   3.6  
AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA...    28   3.6  
AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-P...    27   8.2  
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P...    27   8.2  

>AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p
           protein.
          Length = 70

 Score =  120 bits (288), Expect = 6e-28
 Identities = 54/67 (80%), Positives = 62/67 (92%)
 Frame = +3

Query: 60  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPG 239
           EIK++KDFL KARR DA++VKIKKNP N KFK+RCSRFLYTLV+ DKEKA+K+KQSLPPG
Sbjct: 4   EIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPG 63

Query: 240 LQVKEVK 260
           LQVKEVK
Sbjct: 64  LQVKEVK 70


>AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA
           protein.
          Length = 70

 Score =  120 bits (288), Expect = 6e-28
 Identities = 54/67 (80%), Positives = 62/67 (92%)
 Frame = +3

Query: 60  EIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPG 239
           EIK++KDFL KARR DA++VKIKKNP N KFK+RCSRFLYTLV+ DKEKA+K+KQSLPPG
Sbjct: 4   EIKEVKDFLNKARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPG 63

Query: 240 LQVKEVK 260
           LQVKEVK
Sbjct: 64  LQVKEVK 70


>AJ318090-1|CAC41645.1|  672|Drosophila melanogaster nuclear RNA
           export factor 1 (NXF1) protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LLDPLTVLVENYSSSTCRXEIKDIKDFLIKARRKDAKSVKI 125
           +L  L++L     ++ CR   KD + F+ + RRK  K VK+
Sbjct: 300 VLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKL 340


>AJ251947-1|CAB64382.2|  672|Drosophila melanogaster tip associating
           protein protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LLDPLTVLVENYSSSTCRXEIKDIKDFLIKARRKDAKSVKI 125
           +L  L++L     ++ CR   KD + F+ + RRK  K VK+
Sbjct: 300 VLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKL 340


>AE014298-1507|AAF47959.3|  672|Drosophila melanogaster CG1664-PA
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   LLDPLTVLVENYSSSTCRXEIKDIKDFLIKARRKDAKSVKI 125
           +L  L++L     ++ CR   KD + F+ + RRK  K VK+
Sbjct: 300 VLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKL 340


>AE014298-1695|AAF48098.2| 1168|Drosophila melanogaster CG32662-PA
           protein.
          Length = 1168

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 90  KARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKE 254
           K R++  + ++ K+  E +K K R  +      I +KE+ EKLK+     L+ KE
Sbjct: 595 KLRKEREEKMREKEREEKIKEKERVEK------IKEKEREEKLKKEKEEKLKEKE 643


>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
            protein.
          Length = 1833

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 66   KDIKDFLIKARRKDAKSVK-IKKNPENVKFKVRCSRFLY 179
            K+IKD   KA + D+K V+ +KK  E V+  +   +  Y
Sbjct: 1074 KEIKDLKTKASKSDSKQVQDLKKQVEEVQASLSAEQKRY 1112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,025,508
Number of Sequences: 53049
Number of extensions: 177760
Number of successful extensions: 554
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)