Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_N07
         (655 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061083-1|AAL28631.1|  329|Drosophila melanogaster LD07058p pro...    38   0.016
AE014296-2582|AAF49577.2|  329|Drosophila melanogaster CG12713-P...    38   0.016
AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p pro...    28   9.6  
AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB...    28   9.6  
AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA...    28   9.6  

>AY061083-1|AAL28631.1|  329|Drosophila melanogaster LD07058p
           protein.
          Length = 329

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +2

Query: 335 VILKLSESQGISPALFARSLLQGVFSDSTIS--KKYIKDTTLIDNKDLAYQVFMGIMNDN 508
           ++++++ ++ ++P    R LLQ  + D   S   + ++   LID+  LA  V   I++DN
Sbjct: 100 LLIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAANVQQCIVSDN 159

Query: 509 QYGPYADVTKQSIG 550
           Q G   D+ ++ +G
Sbjct: 160 QEGSITDLRRRIVG 173



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 562 VETRTRVKVMNITFSDENVLRSRGYDKTPD 651
           ++ +   K   I F DE  LR  GYDKTPD
Sbjct: 178 LKLKNLAKEAGIHFYDEKDLRRMGYDKTPD 207


>AE014296-2582|AAF49577.2|  329|Drosophila melanogaster CG12713-PA
           protein.
          Length = 329

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +2

Query: 335 VILKLSESQGISPALFARSLLQGVFSDSTIS--KKYIKDTTLIDNKDLAYQVFMGIMNDN 508
           ++++++ ++ ++P    R LLQ  + D   S   + ++   LID+  LA  V   I++DN
Sbjct: 100 LLIRMACAEALNPVALCRMLLQEKYKDRHRSHISQLLRHPHLIDDPKLAANVQQCIVSDN 159

Query: 509 QYGPYADVTKQSIG 550
           Q G   D+ ++ +G
Sbjct: 160 QEGSITDLRRRIVG 173



 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 562 VETRTRVKVMNITFSDENVLRSRGYDKTPD 651
           ++ +   K   I F DE  LR  GYDKTPD
Sbjct: 178 LKLKNLAKEAGIHFYDEKDLRRMGYDKTPD 207


>AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p
           protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 FL*FCFIDLCINNDMILPQGMRLYMTI 183
           FL +C I  CI   ++LP+G  LYM +
Sbjct: 208 FLPYCCIP-CIGRQVVLPEGTALYMEV 233


>AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB,
           isoform B protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 FL*FCFIDLCINNDMILPQGMRLYMTI 183
           FL +C I  CI   ++LP+G  LYM +
Sbjct: 208 FLPYCCIP-CIGRQVVLPEGTALYMEV 233


>AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA,
           isoform A protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 263 FL*FCFIDLCINNDMILPQGMRLYMTI 183
           FL +C I  CI   ++LP+G  LYM +
Sbjct: 208 FLPYCCIP-CIGRQVVLPEGTALYMEV 233


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,615,044
Number of Sequences: 53049
Number of extensions: 373917
Number of successful extensions: 1109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)