Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_N07
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    29   2.9  
U39998-4|AAN60511.1|  351|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 57  MKMDFHAGQTKPMKIEEYNAIV-EDFTKLSSFTRKMENELKRKYCHIQP 200
           M  D+HAG+ +P   +EY AI+ + +  L+     M N+ K +   + P
Sbjct: 78  MVNDYHAGKFEPKNYDEYIAIMKKSYPALAGPYETMYNKYKEQVAKLGP 126


>U39998-4|AAN60511.1|  351|Caenorhabditis elegans Hypothetical
           protein ZK622.3c protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 YCHIQPHTLXEYHIIINTKIYETEL*KIPXQYHLNI 290
           YCHI  HTL E     N  ++ TE+  IP  Y  ++
Sbjct: 192 YCHINAHTLAE---TFNANVWNTEI--IPEYYRTSL 222


>U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK622.3d protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 YCHIQPHTLXEYHIIINTKIYETEL*KIPXQYHLNI 290
           YCHI  HTL E     N  ++ TE+  IP  Y  ++
Sbjct: 301 YCHINAHTLAE---TFNANVWNTEI--IPEYYRTSL 331


>U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical
           protein ZK622.3b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 YCHIQPHTLXEYHIIINTKIYETEL*KIPXQYHLNI 290
           YCHI  HTL E     N  ++ TE+  IP  Y  ++
Sbjct: 325 YCHINAHTLAE---TFNANVWNTEI--IPEYYRTSL 355


>U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical
           protein ZK622.3a protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 YCHIQPHTLXEYHIIINTKIYETEL*KIPXQYHLNI 290
           YCHI  HTL E     N  ++ TE+  IP  Y  ++
Sbjct: 316 YCHINAHTLAE---TFNANVWNTEI--IPEYYRTSL 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,588
Number of Sequences: 27780
Number of extensions: 214407
Number of successful extensions: 571
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)