Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_N02
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944 57 3e-09
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254 57 3e-09
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907 57 3e-09
01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568 30 0.38
07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587 29 0.89
07_03_0054 + 12848425-12848593,12850106-12850278 27 3.6
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412... 26 4.7
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 26 6.3
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 25 8.3
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817... 25 8.3
>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
Length = 51
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 99 PFLXWVRMRTGNTIRYNAKRRHWRRTKL 182
P W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22 PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
Length = 51
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 99 PFLXWVRMRTGNTIRYNAKRRHWRRTKL 182
P W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22 PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
Length = 51
Score = 56.8 bits (131), Expect = 3e-09
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +3
Query: 99 PFLXWVRMRTGNTIRYNAKRRHWRRTKL 182
P W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 22 PIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
Length = 407
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 55 IIXAQIGQKAETKQTHSSXG*GCAQETLFDITLRGVTGEGQSSSCKLV 198
+ A +K+E K S+ G A T+FDIT G +G++ S K V
Sbjct: 18 VYGAAYAKKSEAKVA-SAPGLAAAVNTVFDITELGAVADGKTDSTKAV 64
>07_01_1026 - 8865924-8866225,8867051-8867297,8867561-8867587
Length = 191
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 113 PXEEWVCFVSAFWPICALIINVLWADILN 27
P EEW V+A WP+ A++I W IL+
Sbjct: 164 PEEEWSMVVAAGWPVNAILI---WFKILD 189
>07_03_0054 + 12848425-12848593,12850106-12850278
Length = 113
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 209 FNTFTSLQLELCPSPVTPLSVISNSVSCA 123
F T+ S+ +L PSP + L V S+SC+
Sbjct: 8 FTTYVSIVPDLRPSPRSHLCVNHGSISCS 36
>01_03_0025 +
11739930-11740493,11740820-11741020,11741143-11741235,
11741355-11742125
Length = 542
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 114 VRMRTGNTIRYNAKRRHWRRTKLKL 188
++ R +R + RRHWRR L L
Sbjct: 75 IKARNSPLLRVSPFRRHWRRLSLSL 99
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 164 VTPLSVISNSVSCAHPYPXEEWV 96
V P+S ++++VS +P EEW+
Sbjct: 837 VHPISYVTDTVSTMRLFPPEEWL 859
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 96 DPFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 188
DPFL W+R R ++ W+ T ++
Sbjct: 309 DPFLEWLRRRECKDLKRTLVHGRWKATTWRM 339
>08_02_0946 +
22880399-22880600,22881588-22881650,22881786-22881790,
22882143-22882253,22882339-22882443,22882529-22882609,
22883236-22883247,22883680-22883733,22884476-22884586,
22884789-22884935
Length = 296
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 224 FYYITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYP 111
FY T T Q LCP P+T +I N C YP
Sbjct: 208 FYGQLVATITH-QSHLCPLPLTVQPIIWNYDHCLRLYP 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,348,444
Number of Sequences: 37544
Number of extensions: 82723
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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