Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_N02
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    60   3e-10
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    60   3e-10
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    28   1.4  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   3.3  
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical...    27   3.3  
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    25   7.6  
U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    25   7.6  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 99  PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 188
           P   WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +3

Query: 99  PFLXWVRMRTGNTIRYNAKRRHWRRTKLKL 188
           P   WVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 22  PMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 224 FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHP 117
           FYYIT F  F  + + + P P      I  S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 215 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPXEEWVC--FVSAFWPI-CALIINV 48
           I F T T +   +C S ++ +  I  SV C+  YP  E++   F    W + CA+ I++
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCS--YPTFEYIAGGFAINTWCMACAINISL 128


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 124 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 213
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
           protein Y43F8C.12 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 239 LTLQGFYYITFNTFTSLQLELCPSPVTPLSVISNS 135
           L L G++YI F   T +Q  L  +      +ISNS
Sbjct: 358 LILNGYFYIMFRMGTKIQTSLTAAVYKKTLLISNS 392


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
 Frame = -3

Query: 221 YYITFNTFT---SLQLELCPSPVTPLSVISNSVSCAHPYPXEEWVCFVSAFWPICALII 54
           YY  F  F     L  + C   +T L  +   +   HP+  + WV      W I   II
Sbjct: 155 YYPVFLWFAYPVGLSTQTCGVYLTVLVSVHRYLGVCHPFRAKRWVSGKPVKWAIIGSII 213


>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 224 FYYITFNTFTSLQ-LEL--CPSPVTPLSVISNSVSCAHPY 114
           F YI+FN     + LE+  C + VTP  V+S  V   H Y
Sbjct: 289 FIYISFNDMIRKRFLEIFGCKNVVTPQFVVSPPVVVQHDY 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,844,412
Number of Sequences: 27780
Number of extensions: 78193
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)