Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M14
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   134   4e-32
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  134 bits (324), Expect = 4e-32
 Identities = 71/133 (53%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
 Frame = +2

Query: 41  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 220
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 221 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 400
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 401 AYRR---TPAAPG 430
           AYR    T A PG
Sbjct: 120 AYRTEKVTEAGPG 132


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 350 GPVGRPDAPARSAEDRSAYRRTPAAP 427
           G V RP APAR A   +  R  PAAP
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAP 58


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 338 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 424
           T+   PVGR ++ ARS ++ SA R+ P +
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKPTS 36


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 486 IQDQLSLDQHQPFYHEVQHPGAAGVRLYADLSSAERAGASGRPTGPR---RTVSVRTERL 316
           I++++S   H P+Y E++      + +  D +      +      PR   R  S   + +
Sbjct: 175 IKERISFICH-PYYREIKDQDLEEIDIRYDNNETMLEISEALKIPPRYLERIKSKERKTV 233

Query: 315 SVAGTISGGRCKNILKYSIPSLV 247
           +VAG+I G     ILK+   S+V
Sbjct: 234 AVAGSIEGAHKLQILKFLYESIV 256


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 486 IQDQLSLDQHQPFYHEVQHPGAAGVRLYADLSSAERAGASGRPTGPR---RTVSVRTERL 316
           I++++S   H P+Y E++      + +  D +      +      PR   R  S   + +
Sbjct: 175 IKERISFICH-PYYREIKDQDLEEIDIRYDNNETMLEISEALKIPPRYLERIKSKERKTV 233

Query: 315 SVAGTISGGRCKNILKYSIPSLV 247
           +VAG+I G     ILK+   S+V
Sbjct: 234 AVAGSIEGAHKLQILKFLYESIV 256


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 125 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 256
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,455
Number of Sequences: 27780
Number of extensions: 254729
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)