Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M07
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...   146   3e-36
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.1  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   4.1  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    26   4.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   7.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.5  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score =  146 bits (353), Expect = 3e-36
 Identities = 73/153 (47%), Positives = 88/153 (57%)
 Frame = +3

Query: 165 TMVKILFLHPDLGIGGAERLVVDAALAFQKKGHEVAFYTNHHDPTHCFAETRDGTFRVTV 344
           T +KI F+HPDLGIGGAERLVVDAA+  Q  G EV  +T+H D  HCF E RDGT +V V
Sbjct: 15  TPIKIAFIHPDLGIGGAERLVVDAAVGLQSLGKEVVVFTSHCDKKHCFEEIRDGTIKVKV 74

Query: 345 VGDWIPRSILGRFKXXXXXXXXXXXXXXXXXXXXPNEEPLLIFCDSISLCIPFLKMARGP 524
            GDW+P SI GR                        +    I  D +S C+PFL +A   
Sbjct: 75  YGDWLPSSIFGRLSIFCSSLRQVYLTMILLTNYMHFD---AIIVDQLSTCVPFLLLASQ- 130

Query: 525 FRVIFYCHHPDKLLTSEGGILKKLYRAPLNWLE 623
             ++FYCH PDK L   GGILKKLYR P + +E
Sbjct: 131 -MILFYCHFPDKYLAKRGGILKKLYRIPFDTVE 162


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 109 WMFLF-VQMCN*IELVYPLEQW*KYFFFIQ 195
           W FL   ++ +  E+V P ++W +++FF+Q
Sbjct: 282 WNFLMDSKLKHLCEMVEPFDEWEEFYFFLQ 311


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 CILLNNGENTFSSSRLGYRRC*ATCSRCRIGVSEERSR 265
           C+LLN  EN   SSR+   R   T  R R+G +   SR
Sbjct: 167 CVLLNYQENETLSSRISLSRRGQT-RRRRVGAAARASR 203


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 252 KKGHEVAFYTNHHDPTHCFAETRDGTFRVT 341
           + G  +  YT H +P  C A T DG   VT
Sbjct: 356 RSGQLLGEYTGHQEPILCMAITPDGKRVVT 385


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 458 FFIRNNVPCHISSCINHTYIGTCSLKSSQNGPGYPIANNRNTKCTIT 318
           F+   + P  +    N  Y  T  LKS+    GY I N  +   T+T
Sbjct: 396 FYAIYHGPNGLQEIANRIYASTSFLKSALESSGYKIVNKSHFFDTLT 442


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 YLYKCVIK*NWCILLNNGENTFSSSRLGYRRC 214
           Y Y+CVIK ++C L  +    + + +L  + C
Sbjct: 464 YAYECVIKPSYCKLRESLTELYRTQKLRMQDC 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,870
Number of Sequences: 5004
Number of extensions: 60582
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)