Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M06
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     40   3e-04
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     40   5e-04
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    40   5e-04
08_02_1440 - 27113396-27113418,27113976-27114102                       26   5.2  
07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326           26   6.9  
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506...    25   9.2  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 18  KTF*XKARRKDAKSVKIKKNPENVKFKVRXLKGSXYTLXHH 140
           K F   ARRKDA+SV+IK++ + VKFKVR  +   YTL  H
Sbjct: 9   KDFLLTARRKDARSVRIKRSKDAVKFKVRCSR-YLYTLCVH 48



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +1

Query: 106 CSRVPXTPWXITDKEKAEKLKQSLPPGLQVKE 201
           CSR   T   + D +KA KLKQSLPPGL V+E
Sbjct: 38  CSRYLYT-LCVHDTDKANKLKQSLPPGLTVQE 68


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +3

Query: 18  KTF*XKARRKDAKSVKIKKNPENVKFKVRXLKGSXYTL 131
           K F   ARRKDA+SV+IK+  + VKFKVR  K   YTL
Sbjct: 9   KDFLLTARRKDARSVRIKRTKDAVKFKVRCSK-YLYTL 45



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +1

Query: 25  FXLRRGGKTPNRSK*RRTLRMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKE 201
           F L    K     + +RT      +  CS+   T   + D +KA KLKQSLPPGL V+E
Sbjct: 11  FLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGLTVQE 68


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/38 (57%), Positives = 26/38 (68%)
 Frame = +3

Query: 18  KTF*XKARRKDAKSVKIKKNPENVKFKVRXLKGSXYTL 131
           K F   ARRKDA+SV+IK+  + VKFKVR  K   YTL
Sbjct: 39  KDFLLTARRKDARSVRIKRTKDAVKFKVRCSK-YLYTL 75



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 23/59 (38%), Positives = 30/59 (50%)
 Frame = +1

Query: 25  FXLRRGGKTPNRSK*RRTLRMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKE 201
           F L    K     + +RT      +  CS+   T   + D +KA KLKQSLPPGL V+E
Sbjct: 41  FLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYT-LCVFDADKANKLKQSLPPGLTVQE 98


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 148 EKAEKLKQSLPPGLQVKEG 204
           E A KLKQ LPPG Q   G
Sbjct: 25  ENANKLKQFLPPGSQKVSG 43


>07_01_0583 + 4338003-4338377,4338455-4338647,4338734-4339326
          Length = 386

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 VPXTPWXITDKEKAEKLKQSLPPGLQVKEGKVM 213
           V  +PW   + E A K K+S PP  +  EGKV+
Sbjct: 348 VSPSPWRPVEPEAASK-KRSPPPPPRRPEGKVV 379


>02_03_0141 - 15649188-15649274,15649376-15649421,15650476-15650606,
            15652168-15652254,15652470-15652538,15652699-15652845,
            15652923-15653003,15653122-15653223,15653392-15653429,
            15653590-15653692,15653766-15653888,15654872-15654951,
            15655356-15655504,15657794-15658010,15658379-15658448,
            15659167-15659313,15659430-15659486,15663270-15663436,
            15663479-15663569,15664044-15665081,15665580-15665695,
            15666104-15667039,15667108-15667170,15667416-15667970,
            15668293-15668305
          Length = 1570

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 209  TLPSLTWRPGGKLCLSFSAFSLSVMXQGVXGTL 111
            T P + W  GG  C  FSAF  S+    + G +
Sbjct: 1183 TDPVIIWINGGPACSGFSAFLHSIGPLKIEGPM 1215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,592,092
Number of Sequences: 37544
Number of extensions: 58396
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)