Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_M06
(310 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein. 48 7e-06
BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38 p... 48 7e-06
AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38 p... 48 7e-06
BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic polyadenyla... 29 2.1
BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic polyadenyla... 29 2.1
AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens ... 29 2.1
AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic polyadenyla... 29 2.1
AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic polyadenyla... 29 2.1
Z96050-1|CAI19033.1| 1406|Homo sapiens chromosome 1 open reading... 28 6.4
Z94054-1|CAI19459.1| 1406|Homo sapiens chromosome 1 open reading... 28 6.4
AF097535-1|AAF04619.1| 1405|Homo sapiens membrane protein CH1 pr... 28 6.4
>Z26876-1|CAA81488.1| 70|Homo sapiens ribosomal protein protein.
Length = 70
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/34 (76%), Positives = 26/34 (76%)
Frame = +1
Query: 106 CSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEGK 207
CSR T ITDKEKAEKLKQSLPPGL VKE K
Sbjct: 38 CSRYLYT-LVITDKEKAEKLKQSLPPGLAVKELK 70
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3
Query: 18 KTF*XKARRKDAKSVKIKKNPENVKFKVR 104
K F ARRKDAKSVKIKKN +NVKFKVR
Sbjct: 9 KDFLLTARRKDAKSVKIKKNKDNVKFKVR 37
>BC000603-1|AAH00603.1| 70|Homo sapiens ribosomal protein L38
protein.
Length = 70
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/34 (76%), Positives = 26/34 (76%)
Frame = +1
Query: 106 CSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEGK 207
CSR T ITDKEKAEKLKQSLPPGL VKE K
Sbjct: 38 CSRYLYT-LVITDKEKAEKLKQSLPPGLAVKELK 70
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3
Query: 18 KTF*XKARRKDAKSVKIKKNPENVKFKVR 104
K F ARRKDAKSVKIKKN +NVKFKVR
Sbjct: 9 KDFLLTARRKDAKSVKIKKNKDNVKFKVR 37
>AB007185-1|BAA25844.1| 37|Homo sapiens ribosomal protein L38
protein.
Length = 37
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/34 (76%), Positives = 26/34 (76%)
Frame = +1
Query: 106 CSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEGK 207
CSR T ITDKEKAEKLKQSLPPGL VKE K
Sbjct: 5 CSRYLYT-LVITDKEKAEKLKQSLPPGLAVKELK 37
>BC050629-1|AAH50629.1| 561|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 561
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 82 RMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEG 204
+MSS R C V PW + D Q L P V G
Sbjct: 390 KMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVG 430
>BC035348-1|AAH35348.1| 486|Homo sapiens cytoplasmic
polyadenylation element binding protein 1 protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 82 RMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEG 204
+MSS R C V PW + D Q L P V G
Sbjct: 315 KMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVG 355
>AK023265-1|BAB14496.1| 486|Homo sapiens protein ( Homo sapiens
cDNA FLJ13203 fis, clone NT2RP3004504, highly similar to
M.musculus mRNA for CPEB protein. ).
Length = 486
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 82 RMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEG 204
+MSS R C V PW + D Q L P V G
Sbjct: 315 KMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVG 355
>AF329403-1|AAK01240.1| 491|Homo sapiens cytoplasmic
polyadenylation element-binding protein short form
protein.
Length = 491
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 82 RMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEG 204
+MSS R C V PW + D Q L P V G
Sbjct: 320 KMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVG 360
>AF329402-1|AAK01239.1| 566|Homo sapiens cytoplasmic
polyadenylation element-binding protein long form
protein.
Length = 566
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 82 RMSSSRFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEG 204
+MSS R C V PW + D Q L P V G
Sbjct: 395 KMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVG 435
>Z96050-1|CAI19033.1| 1406|Homo sapiens chromosome 1 open reading
frame 9 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 37 RGGKTPNRSK*RRTLRMSSSRFXCSRVPXTPWXITDKEKA 156
RG K K RR L + S F CS V W + KE +
Sbjct: 190 RGKKEEKMKKHRRALALVSCLFLCSLVWLPSWRVCCKESS 229
>Z94054-1|CAI19459.1| 1406|Homo sapiens chromosome 1 open reading
frame 9 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 37 RGGKTPNRSK*RRTLRMSSSRFXCSRVPXTPWXITDKEKA 156
RG K K RR L + S F CS V W + KE +
Sbjct: 190 RGKKEEKMKKHRRALALVSCLFLCSLVWLPSWRVCCKESS 229
>AF097535-1|AAF04619.1| 1405|Homo sapiens membrane protein CH1
protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 37 RGGKTPNRSK*RRTLRMSSSRFXCSRVPXTPWXITDKEKA 156
RG K K RR L + S F CS V W + KE +
Sbjct: 189 RGKKEEKMKKHRRALALVSCLFLCSLVWLPSWRVCCKESS 228
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,704,617
Number of Sequences: 237096
Number of extensions: 367464
Number of successful extensions: 6234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6234
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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