Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M06
         (310 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p pro...    46   1e-05
AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA ...    46   1e-05
BT010270-1|AAQ23588.1| 1260|Drosophila melanogaster RE21134p pro...    29   1.5  
AE014296-3143|AAO41234.1| 1156|Drosophila melanogaster CG32206-P...    29   1.5  
AE014296-3142|AAF49168.3| 1260|Drosophila melanogaster CG32206-P...    29   1.5  

>AY075491-1|AAL68301.1|   70|Drosophila melanogaster RE42506p
           protein.
          Length = 70

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +1

Query: 97  RFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEGK 207
           +  CSR   T   + DKEKA+K+KQSLPPGLQVKE K
Sbjct: 35  KIRCSRFLYT-LVVQDKEKADKIKQSLPPGLQVKEVK 70



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +3

Query: 18  KTF*XKARRKDAKSVKIKKNPENVKFKVRXLKGSXYTL 131
           K F  KARR DA++VKIKKNP N KFK+R  +   YTL
Sbjct: 9   KDFLNKARRSDARAVKIKKNPTNTKFKIRCSR-FLYTL 45


>AE013599-14|EAA46007.1|   70|Drosophila melanogaster CG18001-PA
           protein.
          Length = 70

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +1

Query: 97  RFXCSRVPXTPWXITDKEKAEKLKQSLPPGLQVKEGK 207
           +  CSR   T   + DKEKA+K+KQSLPPGLQVKE K
Sbjct: 35  KIRCSRFLYT-LVVQDKEKADKIKQSLPPGLQVKEVK 70



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +3

Query: 18  KTF*XKARRKDAKSVKIKKNPENVKFKVRXLKGSXYTL 131
           K F  KARR DA++VKIKKNP N KFK+R  +   YTL
Sbjct: 9   KDFLNKARRSDARAVKIKKNPTNTKFKIRCSR-FLYTL 45


>BT010270-1|AAQ23588.1| 1260|Drosophila melanogaster RE21134p
           protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 185 PGGKLCLSFSAFSLSVMXQGV--XGTLEXSNLELDILRVLLYFDRFGVFPP 39
           PG  + LSF++++L ++ Q +    TL  S+L   I R+ ++ D +G + P
Sbjct: 470 PGDLIWLSFTSYNLQILQQAIHDNNTLGRSDLPPWITRLRMW-DSYGTYVP 519


>AE014296-3143|AAO41234.1| 1156|Drosophila melanogaster CG32206-PC,
           isoform C protein.
          Length = 1156

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 185 PGGKLCLSFSAFSLSVMXQGV--XGTLEXSNLELDILRVLLYFDRFGVFPP 39
           PG  + LSF++++L ++ Q +    TL  S+L   I R+ ++ D +G + P
Sbjct: 470 PGDLIWLSFTSYNLQILQQAIHDNNTLGRSDLPPWITRLRMW-DSYGTYVP 519


>AE014296-3142|AAF49168.3| 1260|Drosophila melanogaster CG32206-PB,
           isoform B protein.
          Length = 1260

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 185 PGGKLCLSFSAFSLSVMXQGV--XGTLEXSNLELDILRVLLYFDRFGVFPP 39
           PG  + LSF++++L ++ Q +    TL  S+L   I R+ ++ D +G + P
Sbjct: 470 PGDLIWLSFTSYNLQILQQAIHDNNTLGRSDLPPWITRLRMW-DSYGTYVP 519


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,577
Number of Sequences: 53049
Number of extensions: 97864
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)