Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M05
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.2  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   7.5  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.5  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   9.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.9  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 259 LSSIWALPF-YMTLARYSETSVLCAESSRCV 348
           +  IW++   YMTL+  S TS +C E  RC+
Sbjct: 340 IGRIWSIKLTYMTLSGAS-TSAVCEEKDRCL 369


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 41  SFLFRHKFSNIKCRVYVYKI*FSSLI--IFIDRIEFERTS 154
           SF +R  F   KC VY+Y++ F  ++  +F D + F  T+
Sbjct: 594 SFFYRI-FVKQKCHVYLYRLDFLRVLDKMFNDHVYFSTTN 632


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 11  ETYESVFVQFSFLFRHKFSNIKCRVYVY 94
           +T  S+ +QF F+ R K  + K   Y+Y
Sbjct: 211 KTLHSIMIQFGFICRQKSISKKIAYYLY 238


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = +1

Query: 202 FYSLQLLQKPGSTIHQVAELSSIW-ALPFYMTLARYSETSVLCAESSRCVATGGTAASRR 378
           F   ++   P   +H+V  LSS W  L    TL       VL  E+S     G ++    
Sbjct: 73  FLDDEVAYHPEENVHKVVGLSSAWLELDSEDTLIADRSEEVLLKEASYASYCGLSSIILN 132

Query: 379 G-CMTLNTTRYTVRRTSKFCSNRHRKLL 459
           G    +N  RY    +S   S  + K L
Sbjct: 133 GPTSPMNVMRYARAVSSALNSTMNLKFL 160


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   VLXKHTKVYLFNFLFFSVTNFLI*SVVYMFIKYSL 107
           +  K  +  LFN +F   +N ++  +V++F  YSL
Sbjct: 181 IYTKENEDALFNNVFRPCSNIIVSVLVFIFTNYSL 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,741
Number of Sequences: 5004
Number of extensions: 53136
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)